miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5114 5' -60.8 NC_001798.1 + 28095 0.67 0.61062
Target:  5'- --cUCCugcgGcGCUGGCugcuGGUGCCCCAGg -3'
miRNA:   3'- cauAGGca--CuCGACCG----CCGCGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 3890 0.67 0.61062
Target:  5'- ---cCCGgGGGCgGGgGGCcgGCCCCGGg -3'
miRNA:   3'- cauaGGCaCUCGaCCgCCG--CGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 129354 0.68 0.590751
Target:  5'- ---cCCGccGGGcCUGGCGGgGCcCCCGGa -3'
miRNA:   3'- cauaGGCa-CUC-GACCGCCgCG-GGGUC- -5'
5114 5' -60.8 NC_001798.1 + 87902 0.68 0.590751
Target:  5'- -aGUCCGU--GUUGaGCGGaaCGCCCCGGg -3'
miRNA:   3'- caUAGGCAcuCGAC-CGCC--GCGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 25951 0.68 0.580856
Target:  5'- aGUGcgCCGUGcGCUGGcCGGCGgCgCGGg -3'
miRNA:   3'- -CAUa-GGCACuCGACC-GCCGCgGgGUC- -5'
5114 5' -60.8 NC_001798.1 + 52792 0.68 0.580856
Target:  5'- ---cCCGUGAGCgGGaCGGCaGaCCCCGc -3'
miRNA:   3'- cauaGGCACUCGaCC-GCCG-C-GGGGUc -5'
5114 5' -60.8 NC_001798.1 + 154266 0.68 0.561177
Target:  5'- ---cCCGUcccGGCUGGCGuGCGCagCCCGGg -3'
miRNA:   3'- cauaGGCAc--UCGACCGC-CGCG--GGGUC- -5'
5114 5' -60.8 NC_001798.1 + 108756 0.68 0.561177
Target:  5'- -cAUCCGUGAcCUGGCuGGC-CgCCAGg -3'
miRNA:   3'- caUAGGCACUcGACCG-CCGcGgGGUC- -5'
5114 5' -60.8 NC_001798.1 + 57150 0.68 0.561177
Target:  5'- aGUAcagCCGcGGGCUGGCgcccgggccGGCGCCCUc- -3'
miRNA:   3'- -CAUa--GGCaCUCGACCG---------CCGCGGGGuc -5'
5114 5' -60.8 NC_001798.1 + 47869 0.68 0.561177
Target:  5'- ---cCCGUGGGCgccGGCGGgcgcucgcaCGCCCCu- -3'
miRNA:   3'- cauaGGCACUCGa--CCGCC---------GCGGGGuc -5'
5114 5' -60.8 NC_001798.1 + 43022 0.68 0.561177
Target:  5'- ---cCCGgGGGgaGcGCGGgGCCCCGGg -3'
miRNA:   3'- cauaGGCaCUCgaC-CGCCgCGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 102054 0.68 0.561177
Target:  5'- cGUGUCUGcgugGGGgUGGUGGUaggGCCCCAc -3'
miRNA:   3'- -CAUAGGCa---CUCgACCGCCG---CGGGGUc -5'
5114 5' -60.8 NC_001798.1 + 124075 0.68 0.541686
Target:  5'- ---cCCGgGAGgaGGCGGCGCCUg-- -3'
miRNA:   3'- cauaGGCaCUCgaCCGCCGCGGGguc -5'
5114 5' -60.8 NC_001798.1 + 34998 0.69 0.522425
Target:  5'- --cUCCGgccgGGGCgcaccucGGCGGCcaaGCCCCGGc -3'
miRNA:   3'- cauAGGCa---CUCGa------CCGCCG---CGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 2439 0.69 0.512894
Target:  5'- ---cCCGgcGGCUGGCGGCGCCagCCGc -3'
miRNA:   3'- cauaGGCacUCGACCGCCGCGG--GGUc -5'
5114 5' -60.8 NC_001798.1 + 24878 0.69 0.494052
Target:  5'- ---gCCGUGAGcCUGGUcgccGGgGCCCUGGg -3'
miRNA:   3'- cauaGGCACUC-GACCG----CCgCGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 72803 0.69 0.48475
Target:  5'- --uUCC-UGGcgcGCUGGCGGCGCCUCu- -3'
miRNA:   3'- cauAGGcACU---CGACCGCCGCGGGGuc -5'
5114 5' -60.8 NC_001798.1 + 123941 0.7 0.475532
Target:  5'- -gGUCCGgGGGcCUGGUGGCaccuCCCCGGc -3'
miRNA:   3'- caUAGGCaCUC-GACCGCCGc---GGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 2359 0.7 0.448422
Target:  5'- -gGUCCGUGAGCUcGGCcacggcccgcggGGCGCaguaggccUCCAGg -3'
miRNA:   3'- caUAGGCACUCGA-CCG------------CCGCG--------GGGUC- -5'
5114 5' -60.8 NC_001798.1 + 113398 0.7 0.439577
Target:  5'- aUGUCaCGUG-GCUGGCacgGGCGCUCCu- -3'
miRNA:   3'- cAUAG-GCACuCGACCG---CCGCGGGGuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.