miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5114 5' -60.8 NC_001798.1 + 31223 0.7 0.430832
Target:  5'- ---cCCGcgGAGCagcagcagcGGCGGCGCCCCGu -3'
miRNA:   3'- cauaGGCa-CUCGa--------CCGCCGCGGGGUc -5'
5114 5' -60.8 NC_001798.1 + 64818 0.71 0.42219
Target:  5'- cGUA-CCGcGGGCUGGCGuucgaaaaGCGCuCCCAGu -3'
miRNA:   3'- -CAUaGGCaCUCGACCGC--------CGCG-GGGUC- -5'
5114 5' -60.8 NC_001798.1 + 83850 0.71 0.396902
Target:  5'- -cGUCCGggcgGcGCUGGCGG-GCCCgAGg -3'
miRNA:   3'- caUAGGCa---CuCGACCGCCgCGGGgUC- -5'
5114 5' -60.8 NC_001798.1 + 127923 0.71 0.388691
Target:  5'- ----aCGUGGGCaacccgacGGCGGgGCCCCGGg -3'
miRNA:   3'- cauagGCACUCGa-------CCGCCgCGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 4045 0.72 0.356985
Target:  5'- ---gCCGcgcGGGCccGGCGGCGCUCCAGg -3'
miRNA:   3'- cauaGGCa--CUCGa-CCGCCGCGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 25080 0.72 0.349348
Target:  5'- ---cCCGgccaGGGCgccgccgGGCGGCGCCCCGc -3'
miRNA:   3'- cauaGGCa---CUCGa------CCGCCGCGGGGUc -5'
5114 5' -60.8 NC_001798.1 + 51174 0.73 0.305995
Target:  5'- -cGUCCGaggcccGGGC-GGCGGCGCCCCc- -3'
miRNA:   3'- caUAGGCa-----CUCGaCCGCCGCGGGGuc -5'
5114 5' -60.8 NC_001798.1 + 79959 0.73 0.292489
Target:  5'- -cGUCCG-GAGC-GGCGGCGCCgCGu -3'
miRNA:   3'- caUAGGCaCUCGaCCGCCGCGGgGUc -5'
5114 5' -60.8 NC_001798.1 + 23561 0.74 0.266885
Target:  5'- gGUGcCCGcgaGGGCcccgggGGCGGCGCCCCGGc -3'
miRNA:   3'- -CAUaGGCa--CUCGa-----CCGCCGCGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 15252 0.77 0.161142
Target:  5'- -gGUCCGUuggggGGGUacgGGCGGUGCCCCGGg -3'
miRNA:   3'- caUAGGCA-----CUCGa--CCGCCGCGGGGUC- -5'
5114 5' -60.8 NC_001798.1 + 143227 1.08 0.001232
Target:  5'- cGUAUCCGUGAGCUGGCGGCGCCCCAGu -3'
miRNA:   3'- -CAUAGGCACUCGACCGCCGCGGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.