miRNA display CGI


Results 1 - 20 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5116 3' -66.1 NC_001798.1 + 53600 0.65 0.515082
Target:  5'- -gCUGCUgGugCGCGCCCCguucaagagcggggCCGCCgCg -3'
miRNA:   3'- caGGCGGgCugGUGUGGGG--------------GGCGGgG- -5'
5116 3' -66.1 NC_001798.1 + 55088 0.66 0.51237
Target:  5'- gGUCUGCCCucuucuccccucggcGgGCCACACgCgCCCCGgaCCCg -3'
miRNA:   3'- -CAGGCGGG---------------C-UGGUGUG-G-GGGGCg-GGG- -5'
5116 3' -66.1 NC_001798.1 + 45068 0.66 0.508763
Target:  5'- -gUCGCUgGACgACACCCggCGCCUCg -3'
miRNA:   3'- caGGCGGgCUGgUGUGGGggGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 71998 0.66 0.508763
Target:  5'- ---gGCCaCGugCaACGCUgccuaccugCCCCGCCCCa -3'
miRNA:   3'- caggCGG-GCugG-UGUGG---------GGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 74410 0.66 0.508763
Target:  5'- -gCCGgCgGACCugACCgCCgCgGCCCUg -3'
miRNA:   3'- caGGCgGgCUGGugUGG-GG-GgCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 102359 0.66 0.508763
Target:  5'- cUCCGgC-GGCCGCcggaaGCCCaCCCGCCUg -3'
miRNA:   3'- cAGGCgGgCUGGUG-----UGGG-GGGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 135057 0.66 0.508763
Target:  5'- --gCGgCCGGCC--GCCUCCUGCCCg -3'
miRNA:   3'- cagGCgGGCUGGugUGGGGGGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 26409 0.66 0.508763
Target:  5'- cUCgaGCCCGACgGCgacGCgCCCCCGCUg- -3'
miRNA:   3'- cAGg-CGGGCUGgUG---UG-GGGGGCGGgg -5'
5116 3' -66.1 NC_001798.1 + 55018 0.66 0.508763
Target:  5'- -gCCGCCCuGCCgggagACGCCCCggaCuCCCCg -3'
miRNA:   3'- caGGCGGGcUGG-----UGUGGGGg--GcGGGG- -5'
5116 3' -66.1 NC_001798.1 + 76022 0.66 0.508763
Target:  5'- --gUGCCCG-CC-CGCCCUggGCCCCg -3'
miRNA:   3'- cagGCGGGCuGGuGUGGGGggCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 121685 0.66 0.508763
Target:  5'- cGUCgCGCggcugggGGCCGCGgCUCCCGCCgCCg -3'
miRNA:   3'- -CAG-GCGgg-----CUGGUGUgGGGGGCGG-GG- -5'
5116 3' -66.1 NC_001798.1 + 137240 0.66 0.508763
Target:  5'- --gCGCCUGGuuGCugauCCCCuCCGCCaCCu -3'
miRNA:   3'- cagGCGGGCUggUGu---GGGG-GGCGG-GG- -5'
5116 3' -66.1 NC_001798.1 + 149709 0.66 0.508763
Target:  5'- cGUCUuCCUGGCaCACuuCCUCgGCCCCc -3'
miRNA:   3'- -CAGGcGGGCUG-GUGugGGGGgCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 80207 0.66 0.508763
Target:  5'- aUCCGCguguugCCGACguUuuuggacggagGCCCCCCGaCCCg -3'
miRNA:   3'- cAGGCG------GGCUGguG-----------UGGGGGGCgGGG- -5'
5116 3' -66.1 NC_001798.1 + 96799 0.66 0.508763
Target:  5'- -aCCGCgaacaaggggCGACCAuCGCCCgCCGCCUg -3'
miRNA:   3'- caGGCGg---------GCUGGU-GUGGGgGGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 104297 0.66 0.507864
Target:  5'- --gCGCCCGAguCCaauccggACGCCCCCCgagcgaugGCCuCCg -3'
miRNA:   3'- cagGCGGGCU--GG-------UGUGGGGGG--------CGG-GG- -5'
5116 3' -66.1 NC_001798.1 + 96915 0.66 0.499794
Target:  5'- -gCCGCCgGGCUgucggACGCCgCCCGCgCg -3'
miRNA:   3'- caGGCGGgCUGG-----UGUGGgGGGCGgGg -5'
5116 3' -66.1 NC_001798.1 + 7631 0.66 0.499794
Target:  5'- -aCCGCgCgGACCG-GCCCCCggaGUCCCc -3'
miRNA:   3'- caGGCG-GgCUGGUgUGGGGGg--CGGGG- -5'
5116 3' -66.1 NC_001798.1 + 153845 0.66 0.499794
Target:  5'- cUCCGgC--GCCuu-CCCCCCGCCCUc -3'
miRNA:   3'- cAGGCgGgcUGGuguGGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 87296 0.66 0.499794
Target:  5'- -gCUGgCCGACCgccacaGCACCCCCC-UCCa -3'
miRNA:   3'- caGGCgGGCUGG------UGUGGGGGGcGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.