Results 1 - 20 of 433 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5116 | 3' | -66.1 | NC_001798.1 | + | 53600 | 0.65 | 0.515082 |
Target: 5'- -gCUGCUgGugCGCGCCCCguucaagagcggggCCGCCgCg -3' miRNA: 3'- caGGCGGgCugGUGUGGGG--------------GGCGGgG- -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 55088 | 0.66 | 0.51237 |
Target: 5'- gGUCUGCCCucuucuccccucggcGgGCCACACgCgCCCCGgaCCCg -3' miRNA: 3'- -CAGGCGGG---------------C-UGGUGUG-G-GGGGCg-GGG- -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 45068 | 0.66 | 0.508763 |
Target: 5'- -gUCGCUgGACgACACCCggCGCCUCg -3' miRNA: 3'- caGGCGGgCUGgUGUGGGggGCGGGG- -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 71998 | 0.66 | 0.508763 |
Target: 5'- ---gGCCaCGugCaACGCUgccuaccugCCCCGCCCCa -3' miRNA: 3'- caggCGG-GCugG-UGUGG---------GGGGCGGGG- -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 74410 | 0.66 | 0.508763 |
Target: 5'- -gCCGgCgGACCugACCgCCgCgGCCCUg -3' miRNA: 3'- caGGCgGgCUGGugUGG-GG-GgCGGGG- -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 102359 | 0.66 | 0.508763 |
Target: 5'- cUCCGgC-GGCCGCcggaaGCCCaCCCGCCUg -3' miRNA: 3'- cAGGCgGgCUGGUG-----UGGG-GGGCGGGg -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 135057 | 0.66 | 0.508763 |
Target: 5'- --gCGgCCGGCC--GCCUCCUGCCCg -3' miRNA: 3'- cagGCgGGCUGGugUGGGGGGCGGGg -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 26409 | 0.66 | 0.508763 |
Target: 5'- cUCgaGCCCGACgGCgacGCgCCCCCGCUg- -3' miRNA: 3'- cAGg-CGGGCUGgUG---UG-GGGGGCGGgg -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 55018 | 0.66 | 0.508763 |
Target: 5'- -gCCGCCCuGCCgggagACGCCCCggaCuCCCCg -3' miRNA: 3'- caGGCGGGcUGG-----UGUGGGGg--GcGGGG- -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 76022 | 0.66 | 0.508763 |
Target: 5'- --gUGCCCG-CC-CGCCCUggGCCCCg -3' miRNA: 3'- cagGCGGGCuGGuGUGGGGggCGGGG- -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 121685 | 0.66 | 0.508763 |
Target: 5'- cGUCgCGCggcugggGGCCGCGgCUCCCGCCgCCg -3' miRNA: 3'- -CAG-GCGgg-----CUGGUGUgGGGGGCGG-GG- -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 137240 | 0.66 | 0.508763 |
Target: 5'- --gCGCCUGGuuGCugauCCCCuCCGCCaCCu -3' miRNA: 3'- cagGCGGGCUggUGu---GGGG-GGCGG-GG- -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 149709 | 0.66 | 0.508763 |
Target: 5'- cGUCUuCCUGGCaCACuuCCUCgGCCCCc -3' miRNA: 3'- -CAGGcGGGCUG-GUGugGGGGgCGGGG- -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 80207 | 0.66 | 0.508763 |
Target: 5'- aUCCGCguguugCCGACguUuuuggacggagGCCCCCCGaCCCg -3' miRNA: 3'- cAGGCG------GGCUGguG-----------UGGGGGGCgGGG- -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 96799 | 0.66 | 0.508763 |
Target: 5'- -aCCGCgaacaaggggCGACCAuCGCCCgCCGCCUg -3' miRNA: 3'- caGGCGg---------GCUGGU-GUGGGgGGCGGGg -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 104297 | 0.66 | 0.507864 |
Target: 5'- --gCGCCCGAguCCaauccggACGCCCCCCgagcgaugGCCuCCg -3' miRNA: 3'- cagGCGGGCU--GG-------UGUGGGGGG--------CGG-GG- -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 96915 | 0.66 | 0.499794 |
Target: 5'- -gCCGCCgGGCUgucggACGCCgCCCGCgCg -3' miRNA: 3'- caGGCGGgCUGG-----UGUGGgGGGCGgGg -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 7631 | 0.66 | 0.499794 |
Target: 5'- -aCCGCgCgGACCG-GCCCCCggaGUCCCc -3' miRNA: 3'- caGGCG-GgCUGGUgUGGGGGg--CGGGG- -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 153845 | 0.66 | 0.499794 |
Target: 5'- cUCCGgC--GCCuu-CCCCCCGCCCUc -3' miRNA: 3'- cAGGCgGgcUGGuguGGGGGGCGGGG- -5' |
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5116 | 3' | -66.1 | NC_001798.1 | + | 87296 | 0.66 | 0.499794 |
Target: 5'- -gCUGgCCGACCgccacaGCACCCCCC-UCCa -3' miRNA: 3'- caGGCgGGCUGG------UGUGGGGGGcGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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