miRNA display CGI


Results 1 - 20 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5116 3' -66.1 NC_001798.1 + 154543 0.67 0.42263
Target:  5'- -cCCGCgCGGCUuuuuuCCCgcgCCCGCCCCc -3'
miRNA:   3'- caGGCGgGCUGGugu--GGG---GGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 154469 0.7 0.279613
Target:  5'- -cCCGgagCCGGCCGCuCCCCcgcgggcgCCGCCCCu -3'
miRNA:   3'- caGGCg--GGCUGGUGuGGGG--------GGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 153845 0.66 0.499794
Target:  5'- cUCCGgC--GCCuu-CCCCCCGCCCUc -3'
miRNA:   3'- cAGGCgGgcUGGuguGGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 153406 0.67 0.439171
Target:  5'- gGUCgGCCCGcUCGCGCgCCCaggacCCCCg -3'
miRNA:   3'- -CAGgCGGGCuGGUGUGgGGGgc---GGGG- -5'
5116 3' -66.1 NC_001798.1 + 153219 0.67 0.445047
Target:  5'- -aCCGCCCGACgGCccggGCCCgcggcggcggaggaCCCGCgCgCCg -3'
miRNA:   3'- caGGCGGGCUGgUG----UGGG--------------GGGCG-G-GG- -5'
5116 3' -66.1 NC_001798.1 + 152610 0.68 0.398535
Target:  5'- -gCCGCCCcccGCCgACGcagaugggaguCCCCCCggcGCCCCg -3'
miRNA:   3'- caGGCGGGc--UGG-UGU-----------GGGGGG---CGGGG- -5'
5116 3' -66.1 NC_001798.1 + 152378 0.67 0.430854
Target:  5'- -cCCGCCgGGCCGcCGCUCCgUCGCUCg -3'
miRNA:   3'- caGGCGGgCUGGU-GUGGGG-GGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 152137 0.7 0.279613
Target:  5'- -aCCGCCCgcGACCACcCCCaaCCCGCagCCg -3'
miRNA:   3'- caGGCGGG--CUGGUGuGGG--GGGCGg-GG- -5'
5116 3' -66.1 NC_001798.1 + 152102 0.67 0.406468
Target:  5'- gGUCgGCCCcgUCAaGCgUCCCCGCCCCc -3'
miRNA:   3'- -CAGgCGGGcuGGUgUG-GGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 151959 0.66 0.490896
Target:  5'- gGUCUGCguccuuuggauuCCGACCccucgucuCcCCCCCUGUCCCc -3'
miRNA:   3'- -CAGGCG------------GGCUGGu-------GuGGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 151872 0.71 0.250461
Target:  5'- uGUCC-CCCGugUcccucccucACcccgGCCCCCCGCCCg -3'
miRNA:   3'- -CAGGcGGGCugG---------UG----UGGGGGGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 151489 0.68 0.363345
Target:  5'- aUCuCGUCCGugCACAcggcacacacgucgcCCCCCCcUCCCg -3'
miRNA:   3'- cAG-GCGGGCugGUGU---------------GGGGGGcGGGG- -5'
5116 3' -66.1 NC_001798.1 + 151085 0.88 0.016765
Target:  5'- -cCCGCCCGACCcccgccCGCCCCCCGCCCg -3'
miRNA:   3'- caGGCGGGCUGGu-----GUGGGGGGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 151063 0.67 0.414501
Target:  5'- -cCCGCCCGA------CCCCCGCCCg -3'
miRNA:   3'- caGGCGGGCUggugugGGGGGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 151030 0.79 0.065776
Target:  5'- -cCCGCCCGACCccCGCccgaCCCCCGCCCg -3'
miRNA:   3'- caGGCGGGCUGGu-GUG----GGGGGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 150997 0.79 0.065776
Target:  5'- -cCCGCCCGACCccCGCccgaCCCCCGCCCg -3'
miRNA:   3'- caGGCGGGCUGGu-GUG----GGGGGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 150880 0.68 0.360388
Target:  5'- uUCCGCgggucgcccCCGcACCGC-CgCCCCCGCgCCg -3'
miRNA:   3'- cAGGCG---------GGC-UGGUGuG-GGGGGCGgGG- -5'
5116 3' -66.1 NC_001798.1 + 150773 0.7 0.26764
Target:  5'- -gCCGCCCccaGACC-CAgaucccaCCCCCGCCCg -3'
miRNA:   3'- caGGCGGG---CUGGuGUg------GGGGGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 150700 0.73 0.173737
Target:  5'- --gCGCCUG-CgCGCGCCCCCCGCCggCCg -3'
miRNA:   3'- cagGCGGGCuG-GUGUGGGGGGCGG--GG- -5'
5116 3' -66.1 NC_001798.1 + 150261 0.67 0.445047
Target:  5'- -cCCuCCCGACCcgcgcgcgucggucGCGCCUgCCCGgCCCa -3'
miRNA:   3'- caGGcGGGCUGG--------------UGUGGG-GGGCgGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.