miRNA display CGI


Results 21 - 40 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5116 3' -66.1 NC_001798.1 + 150149 0.66 0.476814
Target:  5'- ---aGUCCGAcCCGCGCCucuuccgggggcgggCCgCCGCCCCc -3'
miRNA:   3'- caggCGGGCU-GGUGUGG---------------GG-GGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 150041 0.7 0.273574
Target:  5'- aGUCCgggGCCCGGCgCgGCGCCgCCCUcuugGCCCCc -3'
miRNA:   3'- -CAGG---CGGGCUG-G-UGUGG-GGGG----CGGGG- -5'
5116 3' -66.1 NC_001798.1 + 149709 0.66 0.508763
Target:  5'- cGUCUuCCUGGCaCACuuCCUCgGCCCCc -3'
miRNA:   3'- -CAGGcGGGCUG-GUGugGGGGgCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 149257 0.66 0.464659
Target:  5'- -gCCGgCCGGCgCggGCGCgCCCUGCuCCCg -3'
miRNA:   3'- caGGCgGGCUG-G--UGUGgGGGGCG-GGG- -5'
5116 3' -66.1 NC_001798.1 + 149133 0.72 0.21884
Target:  5'- uUCCcCCCccCCACcuCCCCCUGCCCCc -3'
miRNA:   3'- cAGGcGGGcuGGUGu-GGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 148705 0.71 0.26181
Target:  5'- cUCUGCaCGAUCGgGCCCCCCuCCCUg -3'
miRNA:   3'- cAGGCGgGCUGGUgUGGGGGGcGGGG- -5'
5116 3' -66.1 NC_001798.1 + 148542 0.68 0.360388
Target:  5'- -aCCGCCCu----CG-CCCCCGCCCCa -3'
miRNA:   3'- caGGCGGGcugguGUgGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 148226 0.66 0.490896
Target:  5'- --aCGCgCGA--GC-CCCCUCGCCCCg -3'
miRNA:   3'- cagGCGgGCUggUGuGGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 147991 0.72 0.204347
Target:  5'- --gUGCCCGGCCACAgCCguggguguggcgCCCGUCCCc -3'
miRNA:   3'- cagGCGGGCUGGUGUgGG------------GGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 147944 0.69 0.331755
Target:  5'- -aCCGCCCccacgcGCCGguCACCCCCC-CCCa -3'
miRNA:   3'- caGGCGGGc-----UGGU--GUGGGGGGcGGGg -5'
5116 3' -66.1 NC_001798.1 + 147427 0.67 0.42263
Target:  5'- -cCCGCC--GCCGcCGCCCUuuGCCCg -3'
miRNA:   3'- caGGCGGgcUGGU-GUGGGGggCGGGg -5'
5116 3' -66.1 NC_001798.1 + 147354 0.7 0.298366
Target:  5'- -cCCGUCCcGCCGCGCCCCUUcCCUCu -3'
miRNA:   3'- caGGCGGGcUGGUGUGGGGGGcGGGG- -5'
5116 3' -66.1 NC_001798.1 + 147302 0.7 0.292009
Target:  5'- -gCCGCCCcgcucccgGGCC-CGaCCCUCGCCCCu -3'
miRNA:   3'- caGGCGGG--------CUGGuGUgGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 147172 0.74 0.150824
Target:  5'- -gCCGCCCGGCgCcgggcggaagGCGUCCCCCGCCCg -3'
miRNA:   3'- caGGCGGGCUG-G----------UGUGGGGGGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 147047 0.69 0.331755
Target:  5'- gGUgCGcCCCGGCCggaggggcccccGCACCUCggcggCCGCCCCc -3'
miRNA:   3'- -CAgGC-GGGCUGG------------UGUGGGG-----GGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 146604 0.72 0.228984
Target:  5'- --gCGCCagCGGcCCACGCCUCCCGCCgCa -3'
miRNA:   3'- cagGCGG--GCU-GGUGUGGGGGGCGGgG- -5'
5116 3' -66.1 NC_001798.1 + 146485 0.66 0.49001
Target:  5'- cUCCgggGCCgGGCCGgGCCggcaacgCCCCGCgCCg -3'
miRNA:   3'- cAGG---CGGgCUGGUgUGG-------GGGGCGgGG- -5'
5116 3' -66.1 NC_001798.1 + 146225 0.71 0.234203
Target:  5'- cUCCGCgaGuCCcgACGCCCCCC-CCCCg -3'
miRNA:   3'- cAGGCGggCuGG--UGUGGGGGGcGGGG- -5'
5116 3' -66.1 NC_001798.1 + 145958 0.73 0.177846
Target:  5'- -cCCGCCC-ACC-CACCuaCCCCGCgCCCg -3'
miRNA:   3'- caGGCGGGcUGGuGUGG--GGGGCG-GGG- -5'
5116 3' -66.1 NC_001798.1 + 145884 0.7 0.298366
Target:  5'- cUCCccccacCCCGACCGC-CgCCgCGCCCCa -3'
miRNA:   3'- cAGGc-----GGGCUGGUGuGgGGgGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.