miRNA display CGI


Results 21 - 40 of 433 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5116 3' -66.1 NC_001798.1 + 3794 0.72 0.220838
Target:  5'- --gCGCCCGAggccucgaaccgggcCCGCGCCuCCuCCGCCUCg -3'
miRNA:   3'- cagGCGGGCU---------------GGUGUGG-GG-GGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 3904 0.68 0.389922
Target:  5'- -gCCgGCCCcgGGCCACgGCUCCCCGCugacguaCCCg -3'
miRNA:   3'- caGG-CGGG--CUGGUG-UGGGGGGCG-------GGG- -5'
5116 3' -66.1 NC_001798.1 + 3981 0.71 0.244941
Target:  5'- cGUCCaGCUCGACCGCcgggGCCgCCCGgCCg -3'
miRNA:   3'- -CAGG-CGGGCUGGUG----UGGgGGGCgGGg -5'
5116 3' -66.1 NC_001798.1 + 4138 0.69 0.331755
Target:  5'- -gCCGCCCccggGGCCcucGCggGCaCCCCCGCCUCc -3'
miRNA:   3'- caGGCGGG----CUGG---UG--UG-GGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 4923 0.74 0.147283
Target:  5'- cUCCGCCgCGGCCcggagACGUCCCCCGUCCUc -3'
miRNA:   3'- cAGGCGG-GCUGG-----UGUGGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 4955 0.73 0.195152
Target:  5'- cGUCCGCCaucgCGACCucgGCCCCgCgGCCCUg -3'
miRNA:   3'- -CAGGCGG----GCUGGug-UGGGG-GgCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 5188 0.66 0.490896
Target:  5'- -gCCGCgUCGguaGCCGCGCUCCguguggacgaUCGCCCCg -3'
miRNA:   3'- caGGCG-GGC---UGGUGUGGGG----------GGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 5328 0.74 0.158139
Target:  5'- uUCCGCCCccagguggaACCGCAUUaugcgcggCCCCGCCCCg -3'
miRNA:   3'- cAGGCGGGc--------UGGUGUGG--------GGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 5386 0.69 0.345859
Target:  5'- cGUCCguggcggcgGCCCGuuggUCGCGCCgCCgCCGCUCCg -3'
miRNA:   3'- -CAGG---------CGGGCu---GGUGUGG-GG-GGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 5735 0.7 0.304829
Target:  5'- -cCUGCCCGGggcCCGCgucaucccGCgCUCCGCCCCa -3'
miRNA:   3'- caGGCGGGCU---GGUG--------UGgGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 5873 0.68 0.359652
Target:  5'- -cCUGCCCGggGCCcgcguCAUCCCgcgggcuCCGCCCCg -3'
miRNA:   3'- caGGCGGGC--UGGu----GUGGGG-------GGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 7046 0.72 0.199244
Target:  5'- aUCCGggguuucCCCGGCC-CACCCCCaaaCCCCg -3'
miRNA:   3'- cAGGC-------GGGCUGGuGUGGGGGgc-GGGG- -5'
5116 3' -66.1 NC_001798.1 + 7287 0.67 0.445047
Target:  5'- -gCCGUCCGACCAUcaagaauucccaggGCaccacguguCCCCagggaGCCCCg -3'
miRNA:   3'- caGGCGGGCUGGUG--------------UG---------GGGGg----CGGGG- -5'
5116 3' -66.1 NC_001798.1 + 7495 0.68 0.382968
Target:  5'- ---aGCCCGGucccCUACGCCCCCCucggcaGCCCg -3'
miRNA:   3'- caggCGGGCU----GGUGUGGGGGG------CGGGg -5'
5116 3' -66.1 NC_001798.1 + 7631 0.66 0.499794
Target:  5'- -aCCGCgCgGACCG-GCCCCCggaGUCCCc -3'
miRNA:   3'- caGGCG-GgCUGGUgUGGGGGg--CGGGG- -5'
5116 3' -66.1 NC_001798.1 + 7757 0.71 0.249905
Target:  5'- -cCCGCCUGugUgcucucaACACCCacgacccaCCGCCCCc -3'
miRNA:   3'- caGGCGGGCugG-------UGUGGGg-------GGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 7909 0.7 0.26764
Target:  5'- -aUCGCCgCGGCUGCGCCCUgCGUCCa -3'
miRNA:   3'- caGGCGG-GCUGGUGUGGGGgGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 9018 0.69 0.318078
Target:  5'- -aCgGCCCcgaGACCcacCGCCCCCCGCagCCa -3'
miRNA:   3'- caGgCGGG---CUGGu--GUGGGGGGCGg-GG- -5'
5116 3' -66.1 NC_001798.1 + 9616 0.66 0.482072
Target:  5'- -gCgGCCagcaacagGGCCGC-CCCCagcaCCGCCCCg -3'
miRNA:   3'- caGgCGGg-------CUGGUGuGGGG----GGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 11039 0.66 0.490896
Target:  5'- cUCCcCCCgGGCCcCGCCCauccauuaCCCGCCUCc -3'
miRNA:   3'- cAGGcGGG-CUGGuGUGGG--------GGGCGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.