miRNA display CGI


Results 21 - 40 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5116 3' -66.1 NC_001798.1 + 21168 0.81 0.048707
Target:  5'- cGUCCcCCCGGCC-CGuCCCCCCGUCCCc -3'
miRNA:   3'- -CAGGcGGGCUGGuGU-GGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 21445 0.81 0.048707
Target:  5'- cGUCCcCCCGGCC-CGuCCCCCCGUCCCc -3'
miRNA:   3'- -CAGGcGGGCUGGuGU-GGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 145610 0.81 0.048707
Target:  5'- -gCCGCgaccCCGACCcCGCCCCaCCGCCCCg -3'
miRNA:   3'- caGGCG----GGCUGGuGUGGGG-GGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 21126 0.81 0.048707
Target:  5'- cGUCCcCCCGGCC-CGuCCCCCCGUCCCc -3'
miRNA:   3'- -CAGGcGGGCUGGuGU-GGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 21084 0.81 0.048707
Target:  5'- cGUCCcCCCGGCC-CGuCCCCCCGUCCCc -3'
miRNA:   3'- -CAGGcGGGCUGGuGU-GGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 28965 0.81 0.049947
Target:  5'- -gCCGCCCcGCCGCuCCgCCCGCCCCa -3'
miRNA:   3'- caGGCGGGcUGGUGuGGgGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 24693 0.8 0.059527
Target:  5'- -cCCgGCCCG-CCGCGCCCCCgCGCCCg -3'
miRNA:   3'- caGG-CGGGCuGGUGUGGGGG-GCGGGg -5'
5116 3' -66.1 NC_001798.1 + 54617 0.8 0.061033
Target:  5'- --gCGCCC--CCGCGCCUCCCGCCCCg -3'
miRNA:   3'- cagGCGGGcuGGUGUGGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 31191 0.8 0.062576
Target:  5'- -cCCGCCgCGACCcgaccgGCGCCCCCuggCGCCCCg -3'
miRNA:   3'- caGGCGG-GCUGG------UGUGGGGG---GCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 25127 0.8 0.064157
Target:  5'- -gCCGCgCGG--ACGCCCCCCGCCCCg -3'
miRNA:   3'- caGGCGgGCUggUGUGGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 151030 0.79 0.065776
Target:  5'- -cCCGCCCGACCccCGCccgaCCCCCGCCCg -3'
miRNA:   3'- caGGCGGGCUGGu-GUG----GGGGGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 150997 0.79 0.065776
Target:  5'- -cCCGCCCGACCccCGCccgaCCCCCGCCCg -3'
miRNA:   3'- caGGCGGGCUGGu-GUG----GGGGGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 21380 0.79 0.069134
Target:  5'- cGUCCcCCCGGCC-CGuCCCCCCGgCCCg -3'
miRNA:   3'- -CAGGcGGGCUGGuGU-GGGGGGCgGGG- -5'
5116 3' -66.1 NC_001798.1 + 21354 0.79 0.069134
Target:  5'- cGUCCcCCCGGCC-CGuCCCCCCGgCCCg -3'
miRNA:   3'- -CAGGcGGGCUGGuGU-GGGGGGCgGGG- -5'
5116 3' -66.1 NC_001798.1 + 21406 0.79 0.069134
Target:  5'- cGUCCcCCCGGCC-CGuCCCCCCGgCCCg -3'
miRNA:   3'- -CAGGcGGGCUGGuGU-GGGGGGCgGGG- -5'
5116 3' -66.1 NC_001798.1 + 81804 0.79 0.074482
Target:  5'- --gCGUCCGcCgGCACUCCCCGCCCCg -3'
miRNA:   3'- cagGCGGGCuGgUGUGGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 21309 0.78 0.076351
Target:  5'- cGUCCcCCCGGCCcCccgGCCCCCCGgCCCCc -3'
miRNA:   3'- -CAGGcGGGCUGGuG---UGGGGGGC-GGGG- -5'
5116 3' -66.1 NC_001798.1 + 98664 0.78 0.082232
Target:  5'- gGUCCcgccuCCCGGCC--GCCCCCCGUCCCg -3'
miRNA:   3'- -CAGGc----GGGCUGGugUGGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 81916 0.78 0.085122
Target:  5'- uUCCGCCCGGCCccgccucggcucgcgGgGCCUuuCCCGCCCCc -3'
miRNA:   3'- cAGGCGGGCUGG---------------UgUGGG--GGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 33614 0.78 0.08639
Target:  5'- --aCGCCCGugCcCA-CCCCCGCCCCg -3'
miRNA:   3'- cagGCGGGCugGuGUgGGGGGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.