miRNA display CGI


Results 41 - 60 of 433 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5116 3' -66.1 NC_001798.1 + 57167 0.77 0.093005
Target:  5'- --gCGCCCgGGCCgGCGCCCUCCGCCCa -3'
miRNA:   3'- cagGCGGG-CUGG-UGUGGGGGGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 31949 0.77 0.093005
Target:  5'- -gCCGCCCcGCgCuCGCCCCUCGCCCCc -3'
miRNA:   3'- caGGCGGGcUG-GuGUGGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 84203 0.77 0.095315
Target:  5'- cUCCGCCgUGAUCGCGCCCCCCgggGCgCCg -3'
miRNA:   3'- cAGGCGG-GCUGGUGUGGGGGG---CGgGG- -5'
5116 3' -66.1 NC_001798.1 + 25432 0.77 0.097678
Target:  5'- -gCCGCgCG-CUGCGCCgCCCCGCCCCc -3'
miRNA:   3'- caGGCGgGCuGGUGUGG-GGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 466 0.77 0.099853
Target:  5'- -gCCGCCucccccgCGGCCGCcuCCCCCgCGCCCCg -3'
miRNA:   3'- caGGCGG-------GCUGGUGu-GGGGG-GCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 361 0.77 0.100098
Target:  5'- -cCCGCCCGcCCGCACacgguUCCCCGCCaCCc -3'
miRNA:   3'- caGGCGGGCuGGUGUG-----GGGGGCGG-GG- -5'
5116 3' -66.1 NC_001798.1 + 33984 0.77 0.100098
Target:  5'- uUCCGCCaccacuaccACCAC-CCCCCCGCCCg -3'
miRNA:   3'- cAGGCGGgc-------UGGUGuGGGGGGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 31588 0.77 0.102323
Target:  5'- -cCCGCgCGGCCGuCGCCCCgcgcguccggaguCCGCCCCg -3'
miRNA:   3'- caGGCGgGCUGGU-GUGGGG-------------GGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 23807 0.77 0.102573
Target:  5'- -gUgGCCCGggGCCG-GCCCCCCGCCCCc -3'
miRNA:   3'- caGgCGGGC--UGGUgUGGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 27940 0.77 0.105106
Target:  5'- gGUCCcgGCgCCGGCCGCGCCCCggCGCUCCa -3'
miRNA:   3'- -CAGG--CG-GGCUGGUGUGGGGg-GCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 82235 0.77 0.105106
Target:  5'- cUCCGCCguccaGACCA-GCCCCCCGCCUUu -3'
miRNA:   3'- cAGGCGGg----CUGGUgUGGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 78820 0.76 0.107698
Target:  5'- -gCCGCCCGcgGCgACGgCCCCgGCCCCu -3'
miRNA:   3'- caGGCGGGC--UGgUGUgGGGGgCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 28230 0.76 0.107698
Target:  5'- --gCGCCUGccGCCGCcuGCCCCCCGCCgCCg -3'
miRNA:   3'- cagGCGGGC--UGGUG--UGGGGGGCGG-GG- -5'
5116 3' -66.1 NC_001798.1 + 27647 0.76 0.11035
Target:  5'- -gCCGCCCGccuUCGCGCCCCCC-CCCa -3'
miRNA:   3'- caGGCGGGCu--GGUGUGGGGGGcGGGg -5'
5116 3' -66.1 NC_001798.1 + 118509 0.76 0.115838
Target:  5'- uUCCgGCCCucCCGCACCCCCgCGUUCCg -3'
miRNA:   3'- cAGG-CGGGcuGGUGUGGGGG-GCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 137944 0.76 0.118677
Target:  5'- -gCCGCCCGguccGCCGCGCgcugCUCCCGCUCCa -3'
miRNA:   3'- caGGCGGGC----UGGUGUG----GGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 74775 0.75 0.124249
Target:  5'- --aCGCCgCGGCCucggguccaccgcACGCCgCCCCGCCCCc -3'
miRNA:   3'- cagGCGG-GCUGG-------------UGUGG-GGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 52813 0.75 0.124549
Target:  5'- -cCCGCCUuccugcucgaaGACCugGcggccuucCCCCCCGCCCCc -3'
miRNA:   3'- caGGCGGG-----------CUGGugU--------GGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 96163 0.75 0.127586
Target:  5'- -cUCGCCauggCGGCCGCGCCCCCgGCCgCg -3'
miRNA:   3'- caGGCGG----GCUGGUGUGGGGGgCGGgG- -5'
5116 3' -66.1 NC_001798.1 + 80630 0.75 0.13069
Target:  5'- -gCCGCCgCGACCcacCGCaCCCCCGCCgCg -3'
miRNA:   3'- caGGCGG-GCUGGu--GUG-GGGGGCGGgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.