miRNA display CGI


Results 41 - 60 of 433 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5116 3' -66.1 NC_001798.1 + 80568 0.66 0.482072
Target:  5'- cGUCCcucCCCGAggccccCCACGCCCUcuaCCGaCCCa -3'
miRNA:   3'- -CAGGc--GGGCU------GGUGUGGGG---GGCgGGG- -5'
5116 3' -66.1 NC_001798.1 + 80774 0.66 0.481193
Target:  5'- --aCGCUcuuCGACuCGCGCCCCggcgggccggacgCCGCCCUg -3'
miRNA:   3'- cagGCGG---GCUG-GUGUGGGG-------------GGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 125266 0.66 0.481193
Target:  5'- cGUCC-UCCGGCgCGCACUCCCgaaaccgcaggcgCGCCaCCg -3'
miRNA:   3'- -CAGGcGGGCUG-GUGUGGGGG-------------GCGG-GG- -5'
5116 3' -66.1 NC_001798.1 + 150149 0.66 0.476814
Target:  5'- ---aGUCCGAcCCGCGCCucuuccgggggcgggCCgCCGCCCCc -3'
miRNA:   3'- caggCGGGCU-GGUGUGG---------------GG-GGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 124117 0.66 0.473325
Target:  5'- uUCCGCCaacgcGCUgugGCGCgCCCCCGCCg- -3'
miRNA:   3'- cAGGCGGgc---UGG---UGUG-GGGGGCGGgg -5'
5116 3' -66.1 NC_001798.1 + 2876 0.66 0.473325
Target:  5'- -gCCG-CCGGCCACGCgcaggUCCCCGCgCa -3'
miRNA:   3'- caGGCgGGCUGGUGUG-----GGGGGCGgGg -5'
5116 3' -66.1 NC_001798.1 + 95054 0.66 0.473325
Target:  5'- cUCC-CUCGACgCGCACCCCggCGCCUg -3'
miRNA:   3'- cAGGcGGGCUG-GUGUGGGGg-GCGGGg -5'
5116 3' -66.1 NC_001798.1 + 97996 0.66 0.473325
Target:  5'- -cCUGUUCGACCACuccACCCacagcuucgCCCaGCCCCc -3'
miRNA:   3'- caGGCGGGCUGGUG---UGGG---------GGG-CGGGG- -5'
5116 3' -66.1 NC_001798.1 + 30557 0.66 0.473325
Target:  5'- cGUgUGCaCgGACgAgAUCgCCCCGCCCCu -3'
miRNA:   3'- -CAgGCG-GgCUGgUgUGG-GGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 116238 0.66 0.473325
Target:  5'- --gCGaCCCGG-CGCugCUgCCGCCCCu -3'
miRNA:   3'- cagGC-GGGCUgGUGugGGgGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 131146 0.66 0.473325
Target:  5'- uGUCCaaCCGgagggggacgGCUACACCCCCgCGCaCCUc -3'
miRNA:   3'- -CAGGcgGGC----------UGGUGUGGGGG-GCG-GGG- -5'
5116 3' -66.1 NC_001798.1 + 134796 0.66 0.473325
Target:  5'- -gCCGCCC--CCGgAgCCCUgGCCCCc -3'
miRNA:   3'- caGGCGGGcuGGUgUgGGGGgCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 23461 0.66 0.468115
Target:  5'- cGUCUGacgacgacgacgaCGACgACGCCgCCCgCGCCCCc -3'
miRNA:   3'- -CAGGCgg-----------GCUGgUGUGG-GGG-GCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 82818 0.66 0.464659
Target:  5'- cUCC-CaCCGgaACCGCauuGCCCCCCGCCg- -3'
miRNA:   3'- cAGGcG-GGC--UGGUG---UGGGGGGCGGgg -5'
5116 3' -66.1 NC_001798.1 + 110905 0.66 0.464659
Target:  5'- uUCgCGUgCGGCCAgcCGCCCCCgcCGgCCCg -3'
miRNA:   3'- cAG-GCGgGCUGGU--GUGGGGG--GCgGGG- -5'
5116 3' -66.1 NC_001798.1 + 84427 0.66 0.464659
Target:  5'- ---gGCCCGACUcCcCaCCCCCGCCgCg -3'
miRNA:   3'- caggCGGGCUGGuGuG-GGGGGCGGgG- -5'
5116 3' -66.1 NC_001798.1 + 129164 0.66 0.464659
Target:  5'- gGUUCGCCgCGAgCC-CAUcuucgccaaCCCCCGCCaCCc -3'
miRNA:   3'- -CAGGCGG-GCU-GGuGUG---------GGGGGCGG-GG- -5'
5116 3' -66.1 NC_001798.1 + 149257 0.66 0.464659
Target:  5'- -gCCGgCCGGCgCggGCGCgCCCUGCuCCCg -3'
miRNA:   3'- caGGCgGGCUG-G--UGUGgGGGGCG-GGG- -5'
5116 3' -66.1 NC_001798.1 + 73694 0.66 0.464659
Target:  5'- --aCGCCCGGCC-CAUaaacaggCCCCGCUCg -3'
miRNA:   3'- cagGCGGGCUGGuGUGg------GGGGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 75103 0.67 0.456076
Target:  5'- -cCCGCaCCGGaUAC-CCCCCCGCaguCCg -3'
miRNA:   3'- caGGCG-GGCUgGUGuGGGGGGCGg--GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.