Results 41 - 60 of 433 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5116 | 3' | -66.1 | NC_001798.1 | + | 137240 | 0.66 | 0.508763 |
Target: 5'- --gCGCCUGGuuGCugauCCCCuCCGCCaCCu -3' miRNA: 3'- cagGCGGGCUggUGu---GGGG-GGCGG-GG- -5' |
|||||||
5116 | 3' | -66.1 | NC_001798.1 | + | 149709 | 0.66 | 0.508763 |
Target: 5'- cGUCUuCCUGGCaCACuuCCUCgGCCCCc -3' miRNA: 3'- -CAGGcGGGCUG-GUGugGGGGgCGGGG- -5' |
|||||||
5116 | 3' | -66.1 | NC_001798.1 | + | 80207 | 0.66 | 0.508763 |
Target: 5'- aUCCGCguguugCCGACguUuuuggacggagGCCCCCCGaCCCg -3' miRNA: 3'- cAGGCG------GGCUGguG-----------UGGGGGGCgGGG- -5' |
|||||||
5116 | 3' | -66.1 | NC_001798.1 | + | 96799 | 0.66 | 0.508763 |
Target: 5'- -aCCGCgaacaaggggCGACCAuCGCCCgCCGCCUg -3' miRNA: 3'- caGGCGg---------GCUGGU-GUGGGgGGCGGGg -5' |
|||||||
5116 | 3' | -66.1 | NC_001798.1 | + | 55088 | 0.66 | 0.51237 |
Target: 5'- gGUCUGCCCucuucuccccucggcGgGCCACACgCgCCCCGgaCCCg -3' miRNA: 3'- -CAGGCGGG---------------C-UGGUGUG-G-GGGGCg-GGG- -5' |
|||||||
5116 | 3' | -66.1 | NC_001798.1 | + | 45068 | 0.66 | 0.508763 |
Target: 5'- -gUCGCUgGACgACACCCggCGCCUCg -3' miRNA: 3'- caGGCGGgCUGgUGUGGGggGCGGGG- -5' |
|||||||
5116 | 3' | -66.1 | NC_001798.1 | + | 104297 | 0.66 | 0.507864 |
Target: 5'- --gCGCCCGAguCCaauccggACGCCCCCCgagcgaugGCCuCCg -3' miRNA: 3'- cagGCGGGCU--GG-------UGUGGGGGG--------CGG-GG- -5' |
|||||||
5116 | 3' | -66.1 | NC_001798.1 | + | 47665 | 0.66 | 0.490896 |
Target: 5'- uUCCGCCgCGGCgCugGCCCgaugcgcgCgCGCCCg -3' miRNA: 3'- cAGGCGG-GCUG-GugUGGG--------GgGCGGGg -5' |
|||||||
5116 | 3' | -66.1 | NC_001798.1 | + | 54784 | 0.66 | 0.490896 |
Target: 5'- -gCUGCCCGACgaugACGCCgCCaUGCCCg -3' miRNA: 3'- caGGCGGGCUGg---UGUGGgGG-GCGGGg -5' |
|||||||
5116 | 3' | -66.1 | NC_001798.1 | + | 148226 | 0.66 | 0.490896 |
Target: 5'- --aCGCgCGA--GC-CCCCUCGCCCCg -3' miRNA: 3'- cagGCGgGCUggUGuGGGGGGCGGGG- -5' |
|||||||
5116 | 3' | -66.1 | NC_001798.1 | + | 151959 | 0.66 | 0.490896 |
Target: 5'- gGUCUGCguccuuuggauuCCGACCccucgucuCcCCCCCUGUCCCc -3' miRNA: 3'- -CAGGCG------------GGCUGGu-------GuGGGGGGCGGGG- -5' |
|||||||
5116 | 3' | -66.1 | NC_001798.1 | + | 86106 | 0.66 | 0.490896 |
Target: 5'- -gCCGCCgCGG--ACGCCCgCCGCgCCg -3' miRNA: 3'- caGGCGG-GCUggUGUGGGgGGCGgGG- -5' |
|||||||
5116 | 3' | -66.1 | NC_001798.1 | + | 126292 | 0.66 | 0.490896 |
Target: 5'- cUCCcCCCGAgaCgGCGCCgucuccggagCCCGCCCCg -3' miRNA: 3'- cAGGcGGGCU--GgUGUGGg---------GGGCGGGG- -5' |
|||||||
5116 | 3' | -66.1 | NC_001798.1 | + | 128824 | 0.66 | 0.490896 |
Target: 5'- cGUUCGaCCCcgcgGACCccgGCGCCCCCgCgGCCuCCg -3' miRNA: 3'- -CAGGC-GGG----CUGG---UGUGGGGG-G-CGG-GG- -5' |
|||||||
5116 | 3' | -66.1 | NC_001798.1 | + | 17779 | 0.66 | 0.499794 |
Target: 5'- -gCUGCUaucaaaGA-CACACCCCuCCGaCCCCg -3' miRNA: 3'- caGGCGGg-----CUgGUGUGGGG-GGC-GGGG- -5' |
|||||||
5116 | 3' | -66.1 | NC_001798.1 | + | 87296 | 0.66 | 0.499794 |
Target: 5'- -gCUGgCCGACCgccacaGCACCCCCC-UCCa -3' miRNA: 3'- caGGCgGGCUGG------UGUGGGGGGcGGGg -5' |
|||||||
5116 | 3' | -66.1 | NC_001798.1 | + | 153845 | 0.66 | 0.499794 |
Target: 5'- cUCCGgC--GCCuu-CCCCCCGCCCUc -3' miRNA: 3'- cAGGCgGgcUGGuguGGGGGGCGGGG- -5' |
|||||||
5116 | 3' | -66.1 | NC_001798.1 | + | 7631 | 0.66 | 0.499794 |
Target: 5'- -aCCGCgCgGACCG-GCCCCCggaGUCCCc -3' miRNA: 3'- caGGCG-GgCUGGUgUGGGGGg--CGGGG- -5' |
|||||||
5116 | 3' | -66.1 | NC_001798.1 | + | 96915 | 0.66 | 0.499794 |
Target: 5'- -gCCGCCgGGCUgucggACGCCgCCCGCgCg -3' miRNA: 3'- caGGCGGgCUGG-----UGUGGgGGGCGgGg -5' |
|||||||
5116 | 3' | -66.1 | NC_001798.1 | + | 32585 | 0.66 | 0.499794 |
Target: 5'- -cCCGCgUGgagccGCCGCACCCUgCuCCCCg -3' miRNA: 3'- caGGCGgGC-----UGGUGUGGGGgGcGGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home