miRNA display CGI


Results 41 - 60 of 433 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5116 3' -66.1 NC_001798.1 + 14596 0.71 0.239521
Target:  5'- uGUCa-CCCacugauACCuccCACCCCCCGCCCCc -3'
miRNA:   3'- -CAGgcGGGc-----UGGu--GUGGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 14817 0.69 0.310738
Target:  5'- -cCCGCCCGGCCGCGCCaaaguugUgCUGCCa- -3'
miRNA:   3'- caGGCGGGCUGGUGUGG-------GgGGCGGgg -5'
5116 3' -66.1 NC_001798.1 + 16206 0.68 0.353071
Target:  5'- -gCCGCCCu-CCGCACgCgCCGCCUg -3'
miRNA:   3'- caGGCGGGcuGGUGUGgGgGGCGGGg -5'
5116 3' -66.1 NC_001798.1 + 16556 0.67 0.430854
Target:  5'- aUCCGCguaCCGGCgGCGCCagcaaaaCCaGCCCCc -3'
miRNA:   3'- cAGGCG---GGCUGgUGUGGg------GGgCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 16768 0.67 0.42263
Target:  5'- gGUCCGgggacaCCCGACC-CGCCgCgUGUCCCc -3'
miRNA:   3'- -CAGGC------GGGCUGGuGUGGgGgGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 17779 0.66 0.499794
Target:  5'- -gCUGCUaucaaaGA-CACACCCCuCCGaCCCCg -3'
miRNA:   3'- caGGCGGg-----CUgGUGUGGGG-GGC-GGGG- -5'
5116 3' -66.1 NC_001798.1 + 18472 0.71 0.239521
Target:  5'- aGUuuG-UCGACaCACcccccacuACCCCCCGCCCCc -3'
miRNA:   3'- -CAggCgGGCUG-GUG--------UGGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 19335 0.67 0.430854
Target:  5'- gGUCC-CUCGuggcuCCuCACaacaaaCCCCGCCCCg -3'
miRNA:   3'- -CAGGcGGGCu----GGuGUGg-----GGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 19377 0.68 0.367811
Target:  5'- -cCCGCCCgcauccggcGACC-CACCCCacgcagCGCCCg -3'
miRNA:   3'- caGGCGGG---------CUGGuGUGGGGg-----GCGGGg -5'
5116 3' -66.1 NC_001798.1 + 20010 0.68 0.375338
Target:  5'- -cCCGgCCGGCCggggaGgGCCCCCC-CUCCg -3'
miRNA:   3'- caGGCgGGCUGG-----UgUGGGGGGcGGGG- -5'
5116 3' -66.1 NC_001798.1 + 20253 0.67 0.438335
Target:  5'- uUCCGCCCGAgauCUGCagcaggcgGCCCCacgugcgCgGCCCCa -3'
miRNA:   3'- cAGGCGGGCU---GGUG--------UGGGG-------GgCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 20785 0.71 0.26181
Target:  5'- --gCGCCCG-CCGCGuaggUCUCCCGCCUCa -3'
miRNA:   3'- cagGCGGGCuGGUGU----GGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 21084 0.81 0.048707
Target:  5'- cGUCCcCCCGGCC-CGuCCCCCCGUCCCc -3'
miRNA:   3'- -CAGGcGGGCUGGuGU-GGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 21126 0.81 0.048707
Target:  5'- cGUCCcCCCGGCC-CGuCCCCCCGUCCCc -3'
miRNA:   3'- -CAGGcGGGCUGGuGU-GGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 21168 0.81 0.048707
Target:  5'- cGUCCcCCCGGCC-CGuCCCCCCGUCCCc -3'
miRNA:   3'- -CAGGcGGGCUGGuGU-GGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 21197 0.73 0.186322
Target:  5'- cGUCCcCCCGuccCCcCGuCCCCCCGUCCCc -3'
miRNA:   3'- -CAGGcGGGCu--GGuGU-GGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 21229 0.73 0.186322
Target:  5'- cGUCCcCCCGuccCCcCGuCCCCCCGUCCCc -3'
miRNA:   3'- -CAGGcGGGCu--GGuGU-GGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 21261 0.73 0.186322
Target:  5'- cGUCCcCCCGuccCCcCGuCCCCCCGUCCCc -3'
miRNA:   3'- -CAGGcGGGCu--GGuGU-GGGGGGCGGGG- -5'
5116 3' -66.1 NC_001798.1 + 21309 0.78 0.076351
Target:  5'- cGUCCcCCCGGCCcCccgGCCCCCCGgCCCCc -3'
miRNA:   3'- -CAGGcGGGCUGGuG---UGGGGGGC-GGGG- -5'
5116 3' -66.1 NC_001798.1 + 21354 0.79 0.069134
Target:  5'- cGUCCcCCCGGCC-CGuCCCCCCGgCCCg -3'
miRNA:   3'- -CAGGcGGGCUGGuGU-GGGGGGCgGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.