Results 1 - 20 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5116 | 5' | -55.6 | NC_001798.1 | + | 142563 | 1.1 | 0.002534 |
Target: 5'- cCAACGGCGGGCGAGUUCCCAGCAAACa -3' miRNA: 3'- -GUUGCCGCCCGCUCAAGGGUCGUUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 3323 | 0.77 | 0.364763 |
Target: 5'- gCGGCGGCGgcGGCGGGcUUCCC-GCGGGCg -3' miRNA: 3'- -GUUGCCGC--CCGCUC-AAGGGuCGUUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 26875 | 0.76 | 0.415429 |
Target: 5'- ---gGGCGGGCGGGggUCgGGCGGGCg -3' miRNA: 3'- guugCCGCCCGCUCaaGGgUCGUUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 26845 | 0.76 | 0.415429 |
Target: 5'- ---gGGCGGGCGGGggUCgGGCGGGCg -3' miRNA: 3'- guugCCGCCCGCUCaaGGgUCGUUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 27009 | 0.76 | 0.415429 |
Target: 5'- ---gGGCGGGCGGGggUCgGGCGGGCg -3' miRNA: 3'- guugCCGCCCGCUCaaGGgUCGUUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 26905 | 0.76 | 0.415429 |
Target: 5'- ---gGGCGGGCGGGggUCgGGCGGGCg -3' miRNA: 3'- guugCCGCCCGCUCaaGGgUCGUUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 26815 | 0.76 | 0.415429 |
Target: 5'- ---gGGCGGGCGGGggUCgGGCGGGCg -3' miRNA: 3'- guugCCGCCCGCUCaaGGgUCGUUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 26949 | 0.76 | 0.415429 |
Target: 5'- ---gGGCGGGCGGGggUCgGGCGGGCg -3' miRNA: 3'- guugCCGCCCGCUCaaGGgUCGUUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 26979 | 0.76 | 0.415429 |
Target: 5'- ---gGGCGGGCGGGggUCgGGCGGGCg -3' miRNA: 3'- guugCCGCCCGCUCaaGGgUCGUUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 36091 | 0.74 | 0.496964 |
Target: 5'- gGugGGUGGGCGGGUggugggggggggCCCGGCu-GCg -3' miRNA: 3'- gUugCCGCCCGCUCAa-----------GGGUCGuuUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 16073 | 0.73 | 0.562529 |
Target: 5'- gGGCGGCGGGCGucuGUgggggcagacagcgcUCCCGG-AAACg -3' miRNA: 3'- gUUGCCGCCCGCu--CA---------------AGGGUCgUUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 150372 | 0.73 | 0.52838 |
Target: 5'- -cACGGCGGGCGGcgcGggCCCGGCc-GCg -3' miRNA: 3'- guUGCCGCCCGCU---CaaGGGUCGuuUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 2766 | 0.73 | 0.548385 |
Target: 5'- gCGGCGGCGgcGGCGGcGgagCUCAGCAGGCg -3' miRNA: 3'- -GUUGCCGC--CCGCU-Caa-GGGUCGUUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 27784 | 0.73 | 0.57881 |
Target: 5'- cCAGCcgGGaCGGGUGAGUUCgCUAGgCAAGCa -3' miRNA: 3'- -GUUG--CC-GCCCGCUCAAG-GGUC-GUUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 85833 | 0.73 | 0.568621 |
Target: 5'- gCGGgGGCGGGCGGGggCUCGG-GAACg -3' miRNA: 3'- -GUUgCCGCCCGCUCaaGGGUCgUUUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 77 | 0.72 | 0.617823 |
Target: 5'- gCGGCGGCGGGCGGGcggcagggcagCCCcGCGcGCc -3' miRNA: 3'- -GUUGCCGCCCGCUCaa---------GGGuCGUuUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 53541 | 0.72 | 0.599298 |
Target: 5'- --cCGGCGGGCGAcugcGacCCCAGCcuGCa -3' miRNA: 3'- guuGCCGCCCGCU----CaaGGGUCGuuUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 101835 | 0.72 | 0.599298 |
Target: 5'- -cGCGGCgGGGgGAGgcgugggUCCCGGCGgcGGCg -3' miRNA: 3'- guUGCCG-CCCgCUCa------AGGGUCGU--UUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 154415 | 0.72 | 0.617823 |
Target: 5'- gCGGCGGCGGGCGGGcggcagggcagCCCcGCGcGCc -3' miRNA: 3'- -GUUGCCGCCCGCUCaa---------GGGuCGUuUG- -5' |
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5116 | 5' | -55.6 | NC_001798.1 | + | 73648 | 0.72 | 0.609582 |
Target: 5'- gAugGGCGGGgGGGUUCgggCGGCGGAa -3' miRNA: 3'- gUugCCGCCCgCUCAAGg--GUCGUUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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