miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5116 5' -55.6 NC_001798.1 + 91480 0.69 0.797632
Target:  5'- gGAUGGCGGuGcCGAuGUUCCCcccggcucuuaccGGCGGACc -3'
miRNA:   3'- gUUGCCGCC-C-GCU-CAAGGG-------------UCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 2248 0.69 0.789414
Target:  5'- aGGCGGCGGGCGcGccgCCGGgGGGCg -3'
miRNA:   3'- gUUGCCGCCCGCuCaagGGUCgUUUG- -5'
5116 5' -55.6 NC_001798.1 + 57742 0.69 0.780146
Target:  5'- --cCGGUGGGCGcg--CCCGGCGcAGCg -3'
miRNA:   3'- guuGCCGCCCGCucaaGGGUCGU-UUG- -5'
5116 5' -55.6 NC_001798.1 + 137306 0.69 0.789414
Target:  5'- gGAUGGC-GGCGGccGUUCCCucaucGGCGGGCg -3'
miRNA:   3'- gUUGCCGcCCGCU--CAAGGG-----UCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 91125 0.69 0.798537
Target:  5'- -cGCGG-GGGCGuccucgUCCAGCGAACg -3'
miRNA:   3'- guUGCCgCCCGCucaa--GGGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 127934 0.69 0.798537
Target:  5'- cCGACGGCGGGgcccCGGGcgaaaaggCCCGGCccGCg -3'
miRNA:   3'- -GUUGCCGCCC----GCUCaa------GGGUCGuuUG- -5'
5116 5' -55.6 NC_001798.1 + 122090 0.69 0.798537
Target:  5'- --cUGGCGGGCcugGAGccgCCCGGCGGGg -3'
miRNA:   3'- guuGCCGCCCG---CUCaa-GGGUCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 102563 0.69 0.794906
Target:  5'- uCAGCGGCGGGUGGcGgggcgcggauugCCCGGUgacGAGCu -3'
miRNA:   3'- -GUUGCCGCCCGCU-Caa----------GGGUCG---UUUG- -5'
5116 5' -55.6 NC_001798.1 + 142855 0.69 0.789414
Target:  5'- gGACGGCGGGgGugcuuagucuGGUUCCguagaCAGCAuGACg -3'
miRNA:   3'- gUUGCCGCCCgC----------UCAAGG-----GUCGU-UUG- -5'
5116 5' -55.6 NC_001798.1 + 52617 0.69 0.789414
Target:  5'- uGACGGCGGGuCGAcGgcCCCcgaGGUggGCa -3'
miRNA:   3'- gUUGCCGCCC-GCU-CaaGGG---UCGuuUG- -5'
5116 5' -55.6 NC_001798.1 + 91817 0.69 0.77169
Target:  5'- gGACcGUGGGCGGGgcccgacgccgccccUCCCAGCAcGCc -3'
miRNA:   3'- gUUGcCGCCCGCUCa--------------AGGGUCGUuUG- -5'
5116 5' -55.6 NC_001798.1 + 36611 0.69 0.761217
Target:  5'- gCGGCGGcCGGGCGGGggcgCgCGGCGGc- -3'
miRNA:   3'- -GUUGCC-GCCCGCUCaa--GgGUCGUUug -5'
5116 5' -55.6 NC_001798.1 + 36569 0.69 0.761217
Target:  5'- gCGGCGGcCGGGCGGGggcgCgCGGCGGc- -3'
miRNA:   3'- -GUUGCC-GCCCGCUCaa--GgGUCGUUug -5'
5116 5' -55.6 NC_001798.1 + 93525 0.69 0.761217
Target:  5'- --uCGGCGGaacccagGAGUUCgCCGGCGAGCa -3'
miRNA:   3'- guuGCCGCCcg-----CUCAAG-GGUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 31154 0.69 0.780146
Target:  5'- gGGCGGCGGuGCGGGggcgaCCC-GCGGAa -3'
miRNA:   3'- gUUGCCGCC-CGCUCaa---GGGuCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 149181 0.68 0.833419
Target:  5'- cCggUGGgGGGCGGcUUCCuucgggCAGCAAGCc -3'
miRNA:   3'- -GuuGCCgCCCGCUcAAGG------GUCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 6018 0.68 0.841695
Target:  5'- gCAGCGGCGGcaucGCGAaggGggCCaCAGCGAGa -3'
miRNA:   3'- -GUUGCCGCC----CGCU---CaaGG-GUCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 23711 0.68 0.841695
Target:  5'- -cACGGcCGGGCGGc--CCCGGCGGGu -3'
miRNA:   3'- guUGCC-GCCCGCUcaaGGGUCGUUUg -5'
5116 5' -55.6 NC_001798.1 + 75135 0.68 0.841695
Target:  5'- gGGCGGCGGcGaCGAcGggCCC-GCGAGCc -3'
miRNA:   3'- gUUGCCGCC-C-GCU-CaaGGGuCGUUUG- -5'
5116 5' -55.6 NC_001798.1 + 154151 0.68 0.841695
Target:  5'- -cAUGGCGGGCGGcuGggCUCGGCGuaGGCc -3'
miRNA:   3'- guUGCCGCCCGCU--CaaGGGUCGU--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.