miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5117 3' -56.8 NC_001798.1 + 66007 0.69 0.708556
Target:  5'- aCG-ACc-CCU--GUCGCCCCAGGGCGa -3'
miRNA:   3'- -GCaUGucGGAugUAGUGGGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 69077 0.71 0.626787
Target:  5'- gCGcGCAGCC-GC-UCucggcccgcccggACCCCAGGGCGg -3'
miRNA:   3'- -GCaUGUCGGaUGuAG-------------UGGGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 70759 0.7 0.668414
Target:  5'- gCGUACAGCCUGCucuUCccguCCCCgaucgugcaagAGGGUc -3'
miRNA:   3'- -GCAUGUCGGAUGu--AGu---GGGG-----------UCCCGc -5'
5117 3' -56.8 NC_001798.1 + 71458 0.69 0.7273
Target:  5'- --aGCAGCUcuuugggUGCAUUGCCCUugcgGGGGCGa -3'
miRNA:   3'- gcaUGUCGG-------AUGUAGUGGGG----UCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 73080 0.66 0.868355
Target:  5'- -cUACAGCCUGgG--GCCCCuGGGUc -3'
miRNA:   3'- gcAUGUCGGAUgUagUGGGGuCCCGc -5'
5117 3' -56.8 NC_001798.1 + 75853 0.66 0.860873
Target:  5'- --cGCuGGCCca-GUUugCCCGGGGCGa -3'
miRNA:   3'- gcaUG-UCGGaugUAGugGGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 77686 0.66 0.896136
Target:  5'- --gGCGGCCcag--CGCgCCCGGGGCa -3'
miRNA:   3'- gcaUGUCGGauguaGUG-GGGUCCCGc -5'
5117 3' -56.8 NC_001798.1 + 79074 0.68 0.793353
Target:  5'- ---cCGGCCUACGagCGCCuuuccgccagguaCCAGGGCGu -3'
miRNA:   3'- gcauGUCGGAUGUa-GUGG-------------GGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 79273 0.7 0.648134
Target:  5'- aCGcgGCGGCCgcggACcUgGCCCCGuGGGCGg -3'
miRNA:   3'- -GCa-UGUCGGa---UGuAgUGGGGU-CCCGC- -5'
5117 3' -56.8 NC_001798.1 + 79492 0.68 0.775993
Target:  5'- --cGCAGCUgcug-CGCCgCCGGGGCGa -3'
miRNA:   3'- gcaUGUCGGauguaGUGG-GGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 83347 0.7 0.675488
Target:  5'- ---uCGGCCgcgGCGUCGCCCgcgaacauaggcugCGGGGCGa -3'
miRNA:   3'- gcauGUCGGa--UGUAGUGGG--------------GUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 85001 0.66 0.888847
Target:  5'- gCGUGCgccccgcucgaccGGCCauggcgACGUcCGCCCCGGGGg- -3'
miRNA:   3'- -GCAUG-------------UCGGa-----UGUA-GUGGGGUCCCgc -5'
5117 3' -56.8 NC_001798.1 + 85430 0.71 0.607486
Target:  5'- uGUACaagcaGGCCUACcgccucUCGCCCCAguGGGUGg -3'
miRNA:   3'- gCAUG-----UCGGAUGu-----AGUGGGGU--CCCGC- -5'
5117 3' -56.8 NC_001798.1 + 86318 0.68 0.791549
Target:  5'- gGUGCGGgCCUACuggcuggccaugcgaCGCCUgAGGGCGu -3'
miRNA:   3'- gCAUGUC-GGAUGua-------------GUGGGgUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 88062 0.67 0.828973
Target:  5'- --gGCGGgCU-CGUC-CCCUGGGGCGg -3'
miRNA:   3'- gcaUGUCgGAuGUAGuGGGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 93268 0.66 0.882684
Target:  5'- --cGCGGCCcGCGccggCGCCgUCGGGGCGu -3'
miRNA:   3'- gcaUGUCGGaUGUa---GUGG-GGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 93483 0.66 0.882684
Target:  5'- aCGUGguGCCcgggUACGaggggCGCCCCAcGGCGc -3'
miRNA:   3'- -GCAUguCGG----AUGUa----GUGGGGUcCCGC- -5'
5117 3' -56.8 NC_001798.1 + 94981 0.68 0.794253
Target:  5'- gCGUGCAGgCggcgGCcgCcuggGCCCCgcAGGGCGg -3'
miRNA:   3'- -GCAUGUCgGa---UGuaG----UGGGG--UCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 95694 0.73 0.479471
Target:  5'- gCGgggGCGGCCgGCGUCGCCCgAaagcGGGCGu -3'
miRNA:   3'- -GCa--UGUCGGaUGUAGUGGGgU----CCCGC- -5'
5117 3' -56.8 NC_001798.1 + 105294 0.7 0.658284
Target:  5'- --cGCGGUCUcCAgCGCCuCCAGGGCGu -3'
miRNA:   3'- gcaUGUCGGAuGUaGUGG-GGUCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.