miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5117 3' -56.8 NC_001798.1 + 31233 0.67 0.828973
Target:  5'- --aGCAGCagcgGCggCGCCCCGuugcGGGCGg -3'
miRNA:   3'- gcaUGUCGga--UGuaGUGGGGU----CCCGC- -5'
5117 3' -56.8 NC_001798.1 + 32675 0.66 0.860873
Target:  5'- --aACAGCCUcuGgAUgACCCCGguGGGCa -3'
miRNA:   3'- gcaUGUCGGA--UgUAgUGGGGU--CCCGc -5'
5117 3' -56.8 NC_001798.1 + 34801 0.67 0.820538
Target:  5'- --cGCGGCC--CGggGCCCCGGGGCc -3'
miRNA:   3'- gcaUGUCGGauGUagUGGGGUCCCGc -5'
5117 3' -56.8 NC_001798.1 + 38479 0.67 0.845305
Target:  5'- aCGcGCAcGCCgGCAUCGCCCCGGaGUc -3'
miRNA:   3'- -GCaUGU-CGGaUGUAGUGGGGUCcCGc -5'
5117 3' -56.8 NC_001798.1 + 42067 0.68 0.794253
Target:  5'- cCGUcAgGGUCUcGCGUCGCCcaaagugcuCCAGGGCGu -3'
miRNA:   3'- -GCA-UgUCGGA-UGUAGUGG---------GGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 43345 0.69 0.708556
Target:  5'- aGUGCcGCCccccGCGUCGuCCCCGGGGg- -3'
miRNA:   3'- gCAUGuCGGa---UGUAGU-GGGGUCCCgc -5'
5117 3' -56.8 NC_001798.1 + 43524 0.73 0.498432
Target:  5'- aGgcgGCGGCC-GCGUCucCCgCCAGGGCGg -3'
miRNA:   3'- gCa--UGUCGGaUGUAGu-GG-GGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 44803 0.66 0.895484
Target:  5'- uCGUgaucGCAGUCUuccgucccCAUCGCCCCugcgaacccggagGGGGUGg -3'
miRNA:   3'- -GCA----UGUCGGAu-------GUAGUGGGG-------------UCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 48359 0.66 0.868355
Target:  5'- --cGCGGCCgccCGgggcCGCCCCgcGGGGCGu -3'
miRNA:   3'- gcaUGUCGGau-GUa---GUGGGG--UCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 49850 0.67 0.853188
Target:  5'- aGUGCGGCg-GCGgaggaaCCCGGGGCGc -3'
miRNA:   3'- gCAUGUCGgaUGUagug--GGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 52096 0.67 0.811935
Target:  5'- --cGCAuGaCgUACAUCGCCaCCGGGGCu -3'
miRNA:   3'- gcaUGU-C-GgAUGUAGUGG-GGUCCCGc -5'
5117 3' -56.8 NC_001798.1 + 53517 0.66 0.874909
Target:  5'- --aGCGGCCUggACAUCcccgacgACCCgGcGGGCGa -3'
miRNA:   3'- gcaUGUCGGA--UGUAG-------UGGGgU-CCCGC- -5'
5117 3' -56.8 NC_001798.1 + 55515 0.72 0.567124
Target:  5'- --cGCGcGCCUcACGgcaACCCCAGGGCGu -3'
miRNA:   3'- gcaUGU-CGGA-UGUag-UGGGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 56159 0.69 0.747674
Target:  5'- --gGCGGCUUAUAaCGCCCgGGGGaCGg -3'
miRNA:   3'- gcaUGUCGGAUGUaGUGGGgUCCC-GC- -5'
5117 3' -56.8 NC_001798.1 + 57150 0.7 0.698594
Target:  5'- aGUACAGCCgcggGCuggCGCCCgGGccGGCGc -3'
miRNA:   3'- gCAUGUCGGa---UGua-GUGGGgUC--CCGC- -5'
5117 3' -56.8 NC_001798.1 + 58477 0.68 0.794253
Target:  5'- cCGUGCGGCCc-CGUCGCCgCAGacccGCGg -3'
miRNA:   3'- -GCAUGUCGGauGUAGUGGgGUCc---CGC- -5'
5117 3' -56.8 NC_001798.1 + 58541 0.68 0.785191
Target:  5'- cCGUGgucuguUGGCCgcucgGCGUC-CUCCGGGGCGu -3'
miRNA:   3'- -GCAU------GUCGGa----UGUAGuGGGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 58749 0.67 0.845305
Target:  5'- uCGU-CAGCCcgccgACGaCAacCCCCAGGGUGc -3'
miRNA:   3'- -GCAuGUCGGa----UGUaGU--GGGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 61826 0.66 0.875627
Target:  5'- gCGgGCAcGCCU---UCGCCCCGGGGg- -3'
miRNA:   3'- -GCaUGU-CGGAuguAGUGGGGUCCCgc -5'
5117 3' -56.8 NC_001798.1 + 65640 0.66 0.889521
Target:  5'- --cACGGCCcgaACGUCGCUgugCCAGGGUu -3'
miRNA:   3'- gcaUGUCGGa--UGUAGUGG---GGUCCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.