miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5117 3' -56.8 NC_001798.1 + 5879 0.69 0.718454
Target:  5'- --cGgGGCCcGCGUCAUCCCGcGGGCu -3'
miRNA:   3'- gcaUgUCGGaUGUAGUGGGGU-CCCGc -5'
5117 3' -56.8 NC_001798.1 + 71458 0.69 0.7273
Target:  5'- --aGCAGCUcuuugggUGCAUUGCCCUugcgGGGGCGa -3'
miRNA:   3'- gcaUGUCGG-------AUGUAGUGGGG----UCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 111604 0.69 0.728279
Target:  5'- gCGggGCGGCCUcCuggaGCCCCGgGGGCGg -3'
miRNA:   3'- -GCa-UGUCGGAuGuag-UGGGGU-CCCGC- -5'
5117 3' -56.8 NC_001798.1 + 27460 0.69 0.746713
Target:  5'- --cACAGCCUGCuaguCCCCguccugccgcgcgGGGGCGg -3'
miRNA:   3'- gcaUGUCGGAUGuaguGGGG-------------UCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 56159 0.69 0.747674
Target:  5'- --gGCGGCUUAUAaCGCCCgGGGGaCGg -3'
miRNA:   3'- gcaUGUCGGAUGUaGUGGGgUCCC-GC- -5'
5117 3' -56.8 NC_001798.1 + 117979 0.69 0.757226
Target:  5'- aCGUGCAGUUUAag-CGCCcgCCGGGGUGc -3'
miRNA:   3'- -GCAUGUCGGAUguaGUGG--GGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 4070 0.68 0.765729
Target:  5'- --gGCGGCCcGCgGUCGCCgcggggguccgggCCGGGGCGg -3'
miRNA:   3'- gcaUGUCGGaUG-UAGUGG-------------GGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 125053 0.68 0.766668
Target:  5'- --aGguGCCgUACGUCugCCCGuGGGUGg -3'
miRNA:   3'- gcaUguCGG-AUGUAGugGGGU-CCCGC- -5'
5117 3' -56.8 NC_001798.1 + 79492 0.68 0.775993
Target:  5'- --cGCAGCUgcug-CGCCgCCGGGGCGa -3'
miRNA:   3'- gcaUGUCGGauguaGUGG-GGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 58541 0.68 0.785191
Target:  5'- cCGUGgucuguUGGCCgcucgGCGUC-CUCCGGGGCGu -3'
miRNA:   3'- -GCAU------GUCGGa----UGUAGuGGGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 25202 0.68 0.785191
Target:  5'- --cGCGGCC-GCcgCGCCCCGcGGCGc -3'
miRNA:   3'- gcaUGUCGGaUGuaGUGGGGUcCCGC- -5'
5117 3' -56.8 NC_001798.1 + 86318 0.68 0.791549
Target:  5'- gGUGCGGgCCUACuggcuggccaugcgaCGCCUgAGGGCGu -3'
miRNA:   3'- gCAUGUC-GGAUGua-------------GUGGGgUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 79074 0.68 0.793353
Target:  5'- ---cCGGCCUACGagCGCCuuuccgccagguaCCAGGGCGu -3'
miRNA:   3'- gcauGUCGGAUGUa-GUGG-------------GGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 42067 0.68 0.794253
Target:  5'- cCGUcAgGGUCUcGCGUCGCCcaaagugcuCCAGGGCGu -3'
miRNA:   3'- -GCA-UgUCGGA-UGUAGUGG---------GGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 58477 0.68 0.794253
Target:  5'- cCGUGCGGCCc-CGUCGCCgCAGacccGCGg -3'
miRNA:   3'- -GCAUGUCGGauGUAGUGGgGUCc---CGC- -5'
5117 3' -56.8 NC_001798.1 + 94981 0.68 0.794253
Target:  5'- gCGUGCAGgCggcgGCcgCcuggGCCCCgcAGGGCGg -3'
miRNA:   3'- -GCAUGUCgGa---UGuaG----UGGGG--UCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 133566 0.68 0.80317
Target:  5'- gGUGCAGCUgGCcaagagCACgcagacguuuCCCGGGGCGg -3'
miRNA:   3'- gCAUGUCGGaUGua----GUG----------GGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 15923 0.68 0.80317
Target:  5'- gCGUACGGaCCguCAUCuaggGCCCCGGGGg- -3'
miRNA:   3'- -GCAUGUC-GGauGUAG----UGGGGUCCCgc -5'
5117 3' -56.8 NC_001798.1 + 4121 0.67 0.811935
Target:  5'- gCGggcuCGGCCgggGCGcCGCCCCcGGGGCc -3'
miRNA:   3'- -GCau--GUCGGa--UGUaGUGGGG-UCCCGc -5'
5117 3' -56.8 NC_001798.1 + 52096 0.67 0.811935
Target:  5'- --cGCAuGaCgUACAUCGCCaCCGGGGCu -3'
miRNA:   3'- gcaUGU-C-GgAUGUAGUGG-GGUCCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.