miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5117 3' -56.8 NC_001798.1 + 142092 1.08 0.002739
Target:  5'- gCGUACAGCCUACAUCACCCCAGGGCGu -3'
miRNA:   3'- -GCAUGUCGGAUGUAGUGGGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 121993 0.81 0.18961
Target:  5'- --cGCGGCCUccgGCGUCGCCUCGGGGCu -3'
miRNA:   3'- gcaUGUCGGA---UGUAGUGGGGUCCCGc -5'
5117 3' -56.8 NC_001798.1 + 3220 0.76 0.374129
Target:  5'- --cGCGGCgCU-CAggCGCCCCAGGGCGg -3'
miRNA:   3'- gcaUGUCG-GAuGUa-GUGGGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 108820 0.75 0.398978
Target:  5'- cCGU-CGGCCUcgACGUgGCCCguGGGCGu -3'
miRNA:   3'- -GCAuGUCGGA--UGUAgUGGGguCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 3875 0.75 0.416119
Target:  5'- cCGUACAGC--ACG-CGCCCCGgGGGCGg -3'
miRNA:   3'- -GCAUGUCGgaUGUaGUGGGGU-CCCGC- -5'
5117 3' -56.8 NC_001798.1 + 95694 0.73 0.479471
Target:  5'- gCGgggGCGGCCgGCGUCGCCCgAaagcGGGCGu -3'
miRNA:   3'- -GCa--UGUCGGaUGUAGUGGGgU----CCCGC- -5'
5117 3' -56.8 NC_001798.1 + 43524 0.73 0.498432
Target:  5'- aGgcgGCGGCC-GCGUCucCCgCCAGGGCGg -3'
miRNA:   3'- gCa--UGUCGGaUGUAGu-GG-GGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 55515 0.72 0.567124
Target:  5'- --cGCGcGCCUcACGgcaACCCCAGGGCGu -3'
miRNA:   3'- gcaUGU-CGGA-UGUag-UGGGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 85430 0.71 0.607486
Target:  5'- uGUACaagcaGGCCUACcgccucUCGCCCCAguGGGUGg -3'
miRNA:   3'- gCAUG-----UCGGAUGu-----AGUGGGGU--CCCGC- -5'
5117 3' -56.8 NC_001798.1 + 69077 0.71 0.626787
Target:  5'- gCGcGCAGCC-GC-UCucggcccgcccggACCCCAGGGCGg -3'
miRNA:   3'- -GCaUGUCGGaUGuAG-------------UGGGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 138925 0.71 0.637971
Target:  5'- --aGCAGUCUAC--CACCCCGuGGGCa -3'
miRNA:   3'- gcaUGUCGGAUGuaGUGGGGU-CCCGc -5'
5117 3' -56.8 NC_001798.1 + 79273 0.7 0.648134
Target:  5'- aCGcgGCGGCCgcggACcUgGCCCCGuGGGCGg -3'
miRNA:   3'- -GCa-UGUCGGa---UGuAgUGGGGU-CCCGC- -5'
5117 3' -56.8 NC_001798.1 + 105294 0.7 0.658284
Target:  5'- --cGCGGUCUcCAgCGCCuCCAGGGCGu -3'
miRNA:   3'- gcaUGUCGGAuGUaGUGG-GGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 70759 0.7 0.668414
Target:  5'- gCGUACAGCCUGCucuUCccguCCCCgaucgugcaagAGGGUc -3'
miRNA:   3'- -GCAUGUCGGAUGu--AGu---GGGG-----------UCCCGc -5'
5117 3' -56.8 NC_001798.1 + 83347 0.7 0.675488
Target:  5'- ---uCGGCCgcgGCGUCGCCCgcgaacauaggcugCGGGGCGa -3'
miRNA:   3'- gcauGUCGGa--UGUAGUGGG--------------GUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 57150 0.7 0.698594
Target:  5'- aGUACAGCCgcggGCuggCGCCCgGGccGGCGc -3'
miRNA:   3'- gCAUGUCGGa---UGua-GUGGGgUC--CCGC- -5'
5117 3' -56.8 NC_001798.1 + 2988 0.69 0.708556
Target:  5'- gCGgcCGGCCcGCGg-GCCCCGGGcGCGg -3'
miRNA:   3'- -GCauGUCGGaUGUagUGGGGUCC-CGC- -5'
5117 3' -56.8 NC_001798.1 + 66007 0.69 0.708556
Target:  5'- aCG-ACc-CCU--GUCGCCCCAGGGCGa -3'
miRNA:   3'- -GCaUGucGGAugUAGUGGGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 43345 0.69 0.708556
Target:  5'- aGUGCcGCCccccGCGUCGuCCCCGGGGg- -3'
miRNA:   3'- gCAUGuCGGa---UGUAGU-GGGGUCCCgc -5'
5117 3' -56.8 NC_001798.1 + 5879 0.69 0.718454
Target:  5'- --cGgGGCCcGCGUCAUCCCGcGGGCu -3'
miRNA:   3'- gcaUgUCGGaUGUAGUGGGGU-CCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.