miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5117 3' -56.8 NC_001798.1 + 153052 0.67 0.828973
Target:  5'- gGU-UGGCCgGCGcCGCCCCcuGGGGCGg -3'
miRNA:   3'- gCAuGUCGGaUGUaGUGGGG--UCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 152503 0.67 0.828973
Target:  5'- --aAUAGCC-GCG-CGCCCCggcgGGGGCGg -3'
miRNA:   3'- gcaUGUCGGaUGUaGUGGGG----UCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 150307 0.66 0.86389
Target:  5'- uGUGCuugggugucggucugAGCCUGgGUCAUgcgcgaCCGGGGCGc -3'
miRNA:   3'- gCAUG---------------UCGGAUgUAGUGg-----GGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 142092 1.08 0.002739
Target:  5'- gCGUACAGCCUACAUCACCCCAGGGCGu -3'
miRNA:   3'- -GCAUGUCGGAUGUAGUGGGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 140430 0.67 0.837231
Target:  5'- aGUACGGCCUuccCAUCA-CCgAGGaGCa -3'
miRNA:   3'- gCAUGUCGGAu--GUAGUgGGgUCC-CGc -5'
5117 3' -56.8 NC_001798.1 + 138925 0.71 0.637971
Target:  5'- --aGCAGUCUAC--CACCCCGuGGGCa -3'
miRNA:   3'- gcaUGUCGGAUGuaGUGGGGU-CCCGc -5'
5117 3' -56.8 NC_001798.1 + 135439 0.67 0.853188
Target:  5'- -uUGCGGUCUGCggCGgCaCCGGGGCu -3'
miRNA:   3'- gcAUGUCGGAUGuaGUgG-GGUCCCGc -5'
5117 3' -56.8 NC_001798.1 + 135345 0.66 0.889521
Target:  5'- gCGUGCGacGCCUGCcccgCGCUCCGGcagcugcucGGCGg -3'
miRNA:   3'- -GCAUGU--CGGAUGua--GUGGGGUC---------CCGC- -5'
5117 3' -56.8 NC_001798.1 + 134136 0.67 0.820538
Target:  5'- -cUACGGCUcccccgACGUCucggcCCCCGGGGCc -3'
miRNA:   3'- gcAUGUCGGa-----UGUAGu----GGGGUCCCGc -5'
5117 3' -56.8 NC_001798.1 + 133566 0.68 0.80317
Target:  5'- gGUGCAGCUgGCcaagagCACgcagacguuuCCCGGGGCGg -3'
miRNA:   3'- gCAUGUCGGaUGua----GUG----------GGGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 125053 0.68 0.766668
Target:  5'- --aGguGCCgUACGUCugCCCGuGGGUGg -3'
miRNA:   3'- gcaUguCGG-AUGUAGugGGGU-CCCGC- -5'
5117 3' -56.8 NC_001798.1 + 121993 0.81 0.18961
Target:  5'- --cGCGGCCUccgGCGUCGCCUCGGGGCu -3'
miRNA:   3'- gcaUGUCGGA---UGUAGUGGGGUCCCGc -5'
5117 3' -56.8 NC_001798.1 + 121530 0.66 0.878475
Target:  5'- cCGUACAcggucgcggcgcugcGCCUgGCGUgggGCCCguGGGCGa -3'
miRNA:   3'- -GCAUGU---------------CGGA-UGUAg--UGGGguCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 117979 0.69 0.757226
Target:  5'- aCGUGCAGUUUAag-CGCCcgCCGGGGUGc -3'
miRNA:   3'- -GCAUGUCGGAUguaGUGG--GGUCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 117770 0.66 0.860873
Target:  5'- --cGCGGCC-ACGgccaACCCguGGGCGu -3'
miRNA:   3'- gcaUGUCGGaUGUag--UGGGguCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 115515 0.67 0.820538
Target:  5'- cCGUACggGGCgUACGUCgcgGCCCCGGccGGCc -3'
miRNA:   3'- -GCAUG--UCGgAUGUAG---UGGGGUC--CCGc -5'
5117 3' -56.8 NC_001798.1 + 111604 0.69 0.728279
Target:  5'- gCGggGCGGCCUcCuggaGCCCCGgGGGCGg -3'
miRNA:   3'- -GCa-UGUCGGAuGuag-UGGGGU-CCCGC- -5'
5117 3' -56.8 NC_001798.1 + 108820 0.75 0.398978
Target:  5'- cCGU-CGGCCUcgACGUgGCCCguGGGCGu -3'
miRNA:   3'- -GCAuGUCGGA--UGUAgUGGGguCCCGC- -5'
5117 3' -56.8 NC_001798.1 + 105384 0.66 0.882684
Target:  5'- --gGCGGCCUggagggcgGCGUU-CUCCAGGGCc -3'
miRNA:   3'- gcaUGUCGGA--------UGUAGuGGGGUCCCGc -5'
5117 3' -56.8 NC_001798.1 + 105294 0.7 0.658284
Target:  5'- --cGCGGUCUcCAgCGCCuCCAGGGCGu -3'
miRNA:   3'- gcaUGUCGGAuGUaGUGG-GGUCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.