miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5117 5' -62 NC_001798.1 + 142129 1.09 0.000941
Target:  5'- gCGCGCUGCCGGACGCGGCACAGGUGGu -3'
miRNA:   3'- -GCGCGACGGCCUGCGCCGUGUCCACC- -5'
5117 5' -62 NC_001798.1 + 41540 0.66 0.675397
Target:  5'- uGCGCc-CCGG-CGgGGCGCAccgcguaaauacaucGGUGGa -3'
miRNA:   3'- gCGCGacGGCCuGCgCCGUGU---------------CCACC- -5'
5117 5' -62 NC_001798.1 + 134446 0.66 0.671523
Target:  5'- gCGCGCgucGCCGaGcaccccggcGCGCGGUugGcGUGGg -3'
miRNA:   3'- -GCGCGa--CGGC-C---------UGCGCCGugUcCACC- -5'
5117 5' -62 NC_001798.1 + 114864 0.66 0.671523
Target:  5'- aCGCGCgggcgGCCGGucgACGgGGUGCuGGUc- -3'
miRNA:   3'- -GCGCGa----CGGCC---UGCgCCGUGuCCAcc -5'
5117 5' -62 NC_001798.1 + 40162 0.66 0.671523
Target:  5'- gGCGCgUGUCGGAagagaGUGGC-CGGGUc- -3'
miRNA:   3'- gCGCG-ACGGCCUg----CGCCGuGUCCAcc -5'
5117 5' -62 NC_001798.1 + 36022 0.66 0.671523
Target:  5'- cCGCGCcuugGCUguuuggggGGugGCGGCGguGGUc- -3'
miRNA:   3'- -GCGCGa---CGG--------CCugCGCCGUguCCAcc -5'
5117 5' -62 NC_001798.1 + 27521 0.66 0.671523
Target:  5'- nGCGCccGCgGGAaggcagcccCGCGGCGCGcGGgGGg -3'
miRNA:   3'- gCGCGa-CGgCCU---------GCGCCGUGU-CCaCC- -5'
5117 5' -62 NC_001798.1 + 3656 0.66 0.671523
Target:  5'- aGCGCcacguccCCGGGCGCcacGCGCGGGUucuGGa -3'
miRNA:   3'- gCGCGac-----GGCCUGCGc--CGUGUCCA---CC- -5'
5117 5' -62 NC_001798.1 + 5757 0.66 0.670554
Target:  5'- cCGCGCUccGCCccaaaggGGGCGgGGCcGCAGGg-- -3'
miRNA:   3'- -GCGCGA--CGG-------CCUGCgCCG-UGUCCacc -5'
5117 5' -62 NC_001798.1 + 96680 0.66 0.675397
Target:  5'- cCGCGCUggaGCgcguccgggaguuuaUGGugGCGGCGguGG-GGu -3'
miRNA:   3'- -GCGCGA---CG---------------GCCugCGCCGUguCCaCC- -5'
5117 5' -62 NC_001798.1 + 51684 0.66 0.681197
Target:  5'- aGaCGCUGCagcaGGGCGaGGCGCuGGccUGGu -3'
miRNA:   3'- gC-GCGACGg---CCUGCgCCGUGuCC--ACC- -5'
5117 5' -62 NC_001798.1 + 148377 0.66 0.681197
Target:  5'- gGUGaggaggGgCGGGCGUGGCggGCAGGUGu -3'
miRNA:   3'- gCGCga----CgGCCUGCGCCG--UGUCCACc -5'
5117 5' -62 NC_001798.1 + 86934 0.66 0.690835
Target:  5'- aGC-CUGCCGucgcACGC-GCGCAGGcUGGa -3'
miRNA:   3'- gCGcGACGGCc---UGCGcCGUGUCC-ACC- -5'
5117 5' -62 NC_001798.1 + 34610 0.66 0.690835
Target:  5'- aCGCGg-GCaaaGGGCgGCGGCGgCGGGgggGGg -3'
miRNA:   3'- -GCGCgaCGg--CCUG-CGCCGU-GUCCa--CC- -5'
5117 5' -62 NC_001798.1 + 53410 0.66 0.689873
Target:  5'- aCGCGUcgGCCGccaagcaGGCGCucGGCG-AGGUGGa -3'
miRNA:   3'- -GCGCGa-CGGC-------CUGCG--CCGUgUCCACC- -5'
5117 5' -62 NC_001798.1 + 67135 0.66 0.687948
Target:  5'- gGCGCcGCCccuggcaucgcgacGGGCGCaGCACucGUGGc -3'
miRNA:   3'- gCGCGaCGG--------------CCUGCGcCGUGucCACC- -5'
5117 5' -62 NC_001798.1 + 40434 0.66 0.681197
Target:  5'- aCGCGUagGCgGGggugcggaagcACGCGGUA-GGGUGGg -3'
miRNA:   3'- -GCGCGa-CGgCC-----------UGCGCCGUgUCCACC- -5'
5117 5' -62 NC_001798.1 + 149251 0.66 0.681197
Target:  5'- gGCGUcGCCGG-C-CGGCGCGGGc-- -3'
miRNA:   3'- gCGCGaCGGCCuGcGCCGUGUCCacc -5'
5117 5' -62 NC_001798.1 + 58977 0.66 0.681197
Target:  5'- aCGCGUcggcgGCCGGGCGaa-CGCGGGgGGg -3'
miRNA:   3'- -GCGCGa----CGGCCUGCgccGUGUCCaCC- -5'
5117 5' -62 NC_001798.1 + 6660 0.66 0.681197
Target:  5'- cCGCGCUuucucgcagGCCGGGCGCcGC-CuucGUGGa -3'
miRNA:   3'- -GCGCGA---------CGGCCUGCGcCGuGuc-CACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.