miRNA display CGI


Results 61 - 80 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5120 3' -58.3 NC_001798.1 + 35443 0.69 0.640516
Target:  5'- gCGugGGCcgCugGCGccGCGGCCCGucUGCUg -3'
miRNA:   3'- -GCugCCGa-GugCGU--CGUUGGGU--GCGA- -5'
5120 3' -58.3 NC_001798.1 + 38013 0.69 0.640516
Target:  5'- uGAUGGUUC-CGCAGCugaaugGGCCCGUGCa -3'
miRNA:   3'- gCUGCCGAGuGCGUCG------UUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 79690 0.69 0.640516
Target:  5'- aGGCGGCcUGCGU-GCGGCCCcCGCUu -3'
miRNA:   3'- gCUGCCGaGUGCGuCGUUGGGuGCGA- -5'
5120 3' -58.3 NC_001798.1 + 77210 0.69 0.647569
Target:  5'- gCGACGGUggACGCGGCcGugcgggcgcauggcGCCCugGCg -3'
miRNA:   3'- -GCUGCCGagUGCGUCG-U--------------UGGGugCGa -5'
5120 3' -58.3 NC_001798.1 + 70522 0.69 0.650591
Target:  5'- gCGAucacCGGCUC-CGaCA-CGACCCACGCg -3'
miRNA:   3'- -GCU----GCCGAGuGC-GUcGUUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 85175 0.69 0.650591
Target:  5'- uGGCGGCcugUCACGUGGUAggcgugccGCCCGCGa- -3'
miRNA:   3'- gCUGCCG---AGUGCGUCGU--------UGGGUGCga -5'
5120 3' -58.3 NC_001798.1 + 104343 0.69 0.650591
Target:  5'- gGACGGCUCcCGggauCAGCAuGCCCA-GCUg -3'
miRNA:   3'- gCUGCCGAGuGC----GUCGU-UGGGUgCGA- -5'
5120 3' -58.3 NC_001798.1 + 77973 0.69 0.650591
Target:  5'- cCGccuCGGCUggaGCGCGGCGuUCCACGCc -3'
miRNA:   3'- -GCu--GCCGAg--UGCGUCGUuGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 60829 0.69 0.654617
Target:  5'- gGGCGGCcagucuuccguccgcUCGCGCGGCGACgggaUCGCGUc -3'
miRNA:   3'- gCUGCCG---------------AGUGCGUCGUUG----GGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 15294 0.69 0.660652
Target:  5'- uGGCGGUgguCGCGGCGACCgaaACGUUg -3'
miRNA:   3'- gCUGCCGaguGCGUCGUUGGg--UGCGA- -5'
5120 3' -58.3 NC_001798.1 + 149419 0.69 0.660652
Target:  5'- gGGgGGcCUCACGCAGUuGCgCGCGUg -3'
miRNA:   3'- gCUgCC-GAGUGCGUCGuUGgGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 116715 0.69 0.660652
Target:  5'- uCGACGggcccgccauGCUCACGCuGCAgguGCUgGCGCa -3'
miRNA:   3'- -GCUGC----------CGAGUGCGuCGU---UGGgUGCGa -5'
5120 3' -58.3 NC_001798.1 + 114377 0.69 0.660652
Target:  5'- gCGACGGC-C-CGCaccccgucgAGCAGCCCGUGCa -3'
miRNA:   3'- -GCUGCCGaGuGCG---------UCGUUGGGUGCGa -5'
5120 3' -58.3 NC_001798.1 + 27253 0.69 0.660652
Target:  5'- aGGCGGC-CGCGgGaccGCAGCCCcgugGCGCg -3'
miRNA:   3'- gCUGCCGaGUGCgU---CGUUGGG----UGCGa -5'
5120 3' -58.3 NC_001798.1 + 76756 0.69 0.660652
Target:  5'- aCGACGcGCgggagCGCGCcaaGGUGGCCCACGaCg -3'
miRNA:   3'- -GCUGC-CGa----GUGCG---UCGUUGGGUGC-Ga -5'
5120 3' -58.3 NC_001798.1 + 92982 0.69 0.670691
Target:  5'- cCG-UGGCcCGCGCGGCcGCCCAC-CUg -3'
miRNA:   3'- -GCuGCCGaGUGCGUCGuUGGGUGcGA- -5'
5120 3' -58.3 NC_001798.1 + 49125 0.69 0.670691
Target:  5'- aCGAUcugGGCUUcaGCGCGGgu-CCCGCGCUg -3'
miRNA:   3'- -GCUG---CCGAG--UGCGUCguuGGGUGCGA- -5'
5120 3' -58.3 NC_001798.1 + 2440 0.68 0.680699
Target:  5'- cCGGCGGCUgGCGgcgcCAGCcGCCC-UGCg -3'
miRNA:   3'- -GCUGCCGAgUGC----GUCGuUGGGuGCGa -5'
5120 3' -58.3 NC_001798.1 + 31154 0.68 0.680699
Target:  5'- gGGCGGCggUGCgGgGGCGACCCGCGg- -3'
miRNA:   3'- gCUGCCGa-GUG-CgUCGUUGGGUGCga -5'
5120 3' -58.3 NC_001798.1 + 36569 0.68 0.680699
Target:  5'- nCGGCGGCcgggcgggggCGCGCGGCGGCCgG-GCg -3'
miRNA:   3'- -GCUGCCGa---------GUGCGUCGUUGGgUgCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.