miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5120 5' -53.4 NC_001798.1 + 140705 0.91 0.060005
Target:  5'- gAAAAGUGGAUCAC-GCCAACGCCAGUc -3'
miRNA:   3'- -UUUUCACCUAGUGcCGGUUGCGGUCA- -5'
5120 5' -53.4 NC_001798.1 + 3568 0.79 0.36237
Target:  5'- -cAGGUGGggCACGGCCcGCGCCAc- -3'
miRNA:   3'- uuUUCACCuaGUGCCGGuUGCGGUca -5'
5120 5' -53.4 NC_001798.1 + 154099 0.78 0.37913
Target:  5'- -----cGGggCGCGGCCGGCGCCGGg -3'
miRNA:   3'- uuuucaCCuaGUGCCGGUUGCGGUCa -5'
5120 5' -53.4 NC_001798.1 + 114937 0.73 0.623972
Target:  5'- uGAAGGUGGAggaCACcgaGGCCGACguGCCGGUg -3'
miRNA:   3'- -UUUUCACCUa--GUG---CCGGUUG--CGGUCA- -5'
5120 5' -53.4 NC_001798.1 + 43688 0.73 0.634549
Target:  5'- -uGGGUGG-UCACGGCCcggagaugcGugGCCAGg -3'
miRNA:   3'- uuUUCACCuAGUGCCGG---------UugCGGUCa -5'
5120 5' -53.4 NC_001798.1 + 151688 0.72 0.687224
Target:  5'- cGGAGGUGGGUCGCGGUgAAggucguCGUCAGa -3'
miRNA:   3'- -UUUUCACCUAGUGCCGgUU------GCGGUCa -5'
5120 5' -53.4 NC_001798.1 + 77855 0.7 0.824188
Target:  5'- -----aGGcgcUCGCGGCCAACGCCGa- -3'
miRNA:   3'- uuuucaCCu--AGUGCCGGUUGCGGUca -5'
5120 5' -53.4 NC_001798.1 + 118536 0.69 0.873267
Target:  5'- --cGGUGucUCGCGGcCCGGCGCCAu- -3'
miRNA:   3'- uuuUCACcuAGUGCC-GGUUGCGGUca -5'
5120 5' -53.4 NC_001798.1 + 53438 0.69 0.857759
Target:  5'- cGAGGUGGAgcugUCggGCGGCCAgcugagccGCGCCAu- -3'
miRNA:   3'- uUUUCACCU----AG--UGCCGGU--------UGCGGUca -5'
5120 5' -53.4 NC_001798.1 + 24559 0.69 0.857759
Target:  5'- --cGGUGGuggCgGCGGCCGGCGCgCGGa -3'
miRNA:   3'- uuuUCACCua-G-UGCCGGUUGCG-GUCa -5'
5120 5' -53.4 NC_001798.1 + 102194 0.68 0.907917
Target:  5'- cGGAAGccUGGcgCGCGGC--GCGCCGGg -3'
miRNA:   3'- -UUUUC--ACCuaGUGCCGguUGCGGUCa -5'
5120 5' -53.4 NC_001798.1 + 102493 0.68 0.901476
Target:  5'- --uAGUGcGGggACgGGCCGGCGCCGGg -3'
miRNA:   3'- uuuUCAC-CUagUG-CCGGUUGCGGUCa -5'
5120 5' -53.4 NC_001798.1 + 4023 0.68 0.907917
Target:  5'- ---cGUGGcGUCGCGGCCGGCcaccGCCGc- -3'
miRNA:   3'- uuuuCACC-UAGUGCCGGUUG----CGGUca -5'
5120 5' -53.4 NC_001798.1 + 73957 0.68 0.887853
Target:  5'- -cGAGUGGAcgcgCGCGGCCGcggGCuCCGGg -3'
miRNA:   3'- uuUUCACCUa---GUGCCGGU---UGcGGUCa -5'
5120 5' -53.4 NC_001798.1 + 3494 0.67 0.933246
Target:  5'- --cGGcGGcUCAUGGCCAcggcggccgccacguGCGCCAGg -3'
miRNA:   3'- uuuUCaCCuAGUGCCGGU---------------UGCGGUCa -5'
5120 5' -53.4 NC_001798.1 + 145916 0.67 0.931147
Target:  5'- --cGGcgGGAUCGCGGCgAGacgcaGCCGGg -3'
miRNA:   3'- uuuUCa-CCUAGUGCCGgUUg----CGGUCa -5'
5120 5' -53.4 NC_001798.1 + 116421 0.67 0.931147
Target:  5'- -----aGGcccgCGCGGCCGACGCCGc- -3'
miRNA:   3'- uuuucaCCua--GUGCCGGUUGCGGUca -5'
5120 5' -53.4 NC_001798.1 + 77214 0.67 0.936317
Target:  5'- --cGGUGGA-CGCGGCCGugcgggcgcaugGCGCCc-- -3'
miRNA:   3'- uuuUCACCUaGUGCCGGU------------UGCGGuca -5'
5120 5' -53.4 NC_001798.1 + 134986 0.67 0.941233
Target:  5'- uGGGGGccUGGccCGCGGUgGGCGCCAGg -3'
miRNA:   3'- -UUUUC--ACCuaGUGCCGgUUGCGGUCa -5'
5120 5' -53.4 NC_001798.1 + 76902 0.67 0.914106
Target:  5'- cGGGGUGGAcCGaccUGGCCGAUGCCGu- -3'
miRNA:   3'- uUUUCACCUaGU---GCCGGUUGCGGUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.