miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5121 5' -47.5 NC_001798.1 + 122325 0.66 0.999884
Target:  5'- aGCAGC-GCuucGUCGUCGUCuccuACGAg -3'
miRNA:   3'- gCGUCGuUGuaaUAGCAGUAGc---UGCU- -5'
5121 5' -47.5 NC_001798.1 + 139521 0.66 0.999884
Target:  5'- uCGCAGCAGCAgc-UCGaCGUC-ACGc -3'
miRNA:   3'- -GCGUCGUUGUaauAGCaGUAGcUGCu -5'
5121 5' -47.5 NC_001798.1 + 2707 0.66 0.999884
Target:  5'- cCGCGGCGACggUGUCGgccagCAgggGGCGc -3'
miRNA:   3'- -GCGUCGUUGuaAUAGCa----GUag-CUGCu -5'
5121 5' -47.5 NC_001798.1 + 60094 0.66 0.99985
Target:  5'- cCGCAuGCuGCA-----GUCGUCGACGAc -3'
miRNA:   3'- -GCGU-CGuUGUaauagCAGUAGCUGCU- -5'
5121 5' -47.5 NC_001798.1 + 3331 0.66 0.99985
Target:  5'- gGCGGCGggcuucccgcggGCGUcGUCGcCGUCGugGc -3'
miRNA:   3'- gCGUCGU------------UGUAaUAGCaGUAGCugCu -5'
5121 5' -47.5 NC_001798.1 + 144165 0.66 0.999806
Target:  5'- cCGCGGCGGCAgcaccucuUCGgucuggCAcCGACGGu -3'
miRNA:   3'- -GCGUCGUUGUaau-----AGCa-----GUaGCUGCU- -5'
5121 5' -47.5 NC_001798.1 + 106420 0.66 0.999806
Target:  5'- aCGCAcacaccuccCAACGUU-UUGUCAUUGGCGAa -3'
miRNA:   3'- -GCGUc--------GUUGUAAuAGCAGUAGCUGCU- -5'
5121 5' -47.5 NC_001798.1 + 132020 0.66 0.999775
Target:  5'- uGCAGCcuccggggcgaaaagAACGUUcacGUgGUCAUCGGgGAg -3'
miRNA:   3'- gCGUCG---------------UUGUAA---UAgCAGUAGCUgCU- -5'
5121 5' -47.5 NC_001798.1 + 4773 0.66 0.999752
Target:  5'- gGCaucGGCGGCGg---CGUCGUCGGCc- -3'
miRNA:   3'- gCG---UCGUUGUaauaGCAGUAGCUGcu -5'
5121 5' -47.5 NC_001798.1 + 43786 0.66 0.999685
Target:  5'- gCGCAgGCAGCugcgAUCGUgGgCGAUGAa -3'
miRNA:   3'- -GCGU-CGUUGuaa-UAGCAgUaGCUGCU- -5'
5121 5' -47.5 NC_001798.1 + 24410 0.66 0.999685
Target:  5'- cCGuCGGCGGCGgcGUCGcCGgcCGACGAg -3'
miRNA:   3'- -GC-GUCGUUGUaaUAGCaGUa-GCUGCU- -5'
5121 5' -47.5 NC_001798.1 + 41670 0.67 0.999501
Target:  5'- cCGCgAGCAugGCGUgccCG-CAUCGACGGu -3'
miRNA:   3'- -GCG-UCGU--UGUAauaGCaGUAGCUGCU- -5'
5121 5' -47.5 NC_001798.1 + 54034 0.68 0.999053
Target:  5'- gCGCAGCGGCGgcacgUA-CGggAUCGugGAc -3'
miRNA:   3'- -GCGUCGUUGUa----AUaGCagUAGCugCU- -5'
5121 5' -47.5 NC_001798.1 + 102944 0.68 0.998842
Target:  5'- aCGCAGCAuCA-UGUUGUUGaCGGCGGu -3'
miRNA:   3'- -GCGUCGUuGUaAUAGCAGUaGCUGCU- -5'
5121 5' -47.5 NC_001798.1 + 4510 0.68 0.998842
Target:  5'- uCGCGGUcguCGUcAUCGUCGUCGuCGu -3'
miRNA:   3'- -GCGUCGuu-GUAaUAGCAGUAGCuGCu -5'
5121 5' -47.5 NC_001798.1 + 3164 0.68 0.998842
Target:  5'- cCGcCGGCGcCGUcGUCGUCGUCGuCGu -3'
miRNA:   3'- -GC-GUCGUuGUAaUAGCAGUAGCuGCu -5'
5121 5' -47.5 NC_001798.1 + 128501 0.68 0.998592
Target:  5'- uGCGGCugGACGccca-GUCGUCGGCGGu -3'
miRNA:   3'- gCGUCG--UUGUaauagCAGUAGCUGCU- -5'
5121 5' -47.5 NC_001798.1 + 97411 0.68 0.99848
Target:  5'- uGCGGCGGC----UCGUCAgccccgagcagugCGACGAg -3'
miRNA:   3'- gCGUCGUUGuaauAGCAGUa------------GCUGCU- -5'
5121 5' -47.5 NC_001798.1 + 93616 0.68 0.998298
Target:  5'- gCGCuGCGACGgcggaGUCAUCGuCGGg -3'
miRNA:   3'- -GCGuCGUUGUaauagCAGUAGCuGCU- -5'
5121 5' -47.5 NC_001798.1 + 47034 0.68 0.998298
Target:  5'- aCGCGGCAggcGCAcgcggCGUUAUCGGgGAc -3'
miRNA:   3'- -GCGUCGU---UGUaaua-GCAGUAGCUgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.