Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5121 | 5' | -47.5 | NC_001798.1 | + | 139521 | 0.66 | 0.999884 |
Target: 5'- uCGCAGCAGCAgc-UCGaCGUC-ACGc -3' miRNA: 3'- -GCGUCGUUGUaauAGCaGUAGcUGCu -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 2707 | 0.66 | 0.999884 |
Target: 5'- cCGCGGCGACggUGUCGgccagCAgggGGCGc -3' miRNA: 3'- -GCGUCGUUGuaAUAGCa----GUag-CUGCu -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 122325 | 0.66 | 0.999884 |
Target: 5'- aGCAGC-GCuucGUCGUCGUCuccuACGAg -3' miRNA: 3'- gCGUCGuUGuaaUAGCAGUAGc---UGCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 60094 | 0.66 | 0.99985 |
Target: 5'- cCGCAuGCuGCA-----GUCGUCGACGAc -3' miRNA: 3'- -GCGU-CGuUGUaauagCAGUAGCUGCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 3331 | 0.66 | 0.99985 |
Target: 5'- gGCGGCGggcuucccgcggGCGUcGUCGcCGUCGugGc -3' miRNA: 3'- gCGUCGU------------UGUAaUAGCaGUAGCugCu -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 106420 | 0.66 | 0.999806 |
Target: 5'- aCGCAcacaccuccCAACGUU-UUGUCAUUGGCGAa -3' miRNA: 3'- -GCGUc--------GUUGUAAuAGCAGUAGCUGCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 144165 | 0.66 | 0.999806 |
Target: 5'- cCGCGGCGGCAgcaccucuUCGgucuggCAcCGACGGu -3' miRNA: 3'- -GCGUCGUUGUaau-----AGCa-----GUaGCUGCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 132020 | 0.66 | 0.999775 |
Target: 5'- uGCAGCcuccggggcgaaaagAACGUUcacGUgGUCAUCGGgGAg -3' miRNA: 3'- gCGUCG---------------UUGUAA---UAgCAGUAGCUgCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 4773 | 0.66 | 0.999752 |
Target: 5'- gGCaucGGCGGCGg---CGUCGUCGGCc- -3' miRNA: 3'- gCG---UCGUUGUaauaGCAGUAGCUGcu -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 43786 | 0.66 | 0.999685 |
Target: 5'- gCGCAgGCAGCugcgAUCGUgGgCGAUGAa -3' miRNA: 3'- -GCGU-CGUUGuaa-UAGCAgUaGCUGCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 24410 | 0.66 | 0.999685 |
Target: 5'- cCGuCGGCGGCGgcGUCGcCGgcCGACGAg -3' miRNA: 3'- -GC-GUCGUUGUaaUAGCaGUa-GCUGCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 41670 | 0.67 | 0.999501 |
Target: 5'- cCGCgAGCAugGCGUgccCG-CAUCGACGGu -3' miRNA: 3'- -GCG-UCGU--UGUAauaGCaGUAGCUGCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 54034 | 0.68 | 0.999053 |
Target: 5'- gCGCAGCGGCGgcacgUA-CGggAUCGugGAc -3' miRNA: 3'- -GCGUCGUUGUa----AUaGCagUAGCugCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 3164 | 0.68 | 0.998842 |
Target: 5'- cCGcCGGCGcCGUcGUCGUCGUCGuCGu -3' miRNA: 3'- -GC-GUCGUuGUAaUAGCAGUAGCuGCu -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 4510 | 0.68 | 0.998842 |
Target: 5'- uCGCGGUcguCGUcAUCGUCGUCGuCGu -3' miRNA: 3'- -GCGUCGuu-GUAaUAGCAGUAGCuGCu -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 102944 | 0.68 | 0.998842 |
Target: 5'- aCGCAGCAuCA-UGUUGUUGaCGGCGGu -3' miRNA: 3'- -GCGUCGUuGUaAUAGCAGUaGCUGCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 128501 | 0.68 | 0.998592 |
Target: 5'- uGCGGCugGACGccca-GUCGUCGGCGGu -3' miRNA: 3'- gCGUCG--UUGUaauagCAGUAGCUGCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 97411 | 0.68 | 0.99848 |
Target: 5'- uGCGGCGGC----UCGUCAgccccgagcagugCGACGAg -3' miRNA: 3'- gCGUCGUUGuaauAGCAGUa------------GCUGCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 93616 | 0.68 | 0.998298 |
Target: 5'- gCGCuGCGACGgcggaGUCAUCGuCGGg -3' miRNA: 3'- -GCGuCGUUGUaauagCAGUAGCuGCU- -5' |
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5121 | 5' | -47.5 | NC_001798.1 | + | 47034 | 0.68 | 0.998298 |
Target: 5'- aCGCGGCAggcGCAcgcggCGUUAUCGGgGAc -3' miRNA: 3'- -GCGUCGU---UGUaaua-GCAGUAGCUgCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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