miRNA display CGI


Results 21 - 24 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5122 5' -50 NC_001798.1 + 125681 0.66 0.996873
Target:  5'- cAGGGGggUCggggCGaaGGAGucCGACGUCGg -3'
miRNA:   3'- -UCCUCuuAGa---GCg-CCUU--GUUGUAGCa -5'
5122 5' -50 NC_001798.1 + 2560 0.66 0.996873
Target:  5'- cGGGAGGggCggcCGCGGGGCGggggGCGUCc- -3'
miRNA:   3'- -UCCUCUuaGa--GCGCCUUGU----UGUAGca -5'
5122 5' -50 NC_001798.1 + 144148 0.66 0.997743
Target:  5'- cAGGAGAAcacauccUCcCGCGGcGGCAGCAccucuUCGg -3'
miRNA:   3'- -UCCUCUU-------AGaGCGCC-UUGUUGU-----AGCa -5'
5122 5' -50 NC_001798.1 + 124564 0.66 0.997782
Target:  5'- cGGucGAUCUCGgGGAggGCGGCAcCGg -3'
miRNA:   3'- uCCucUUAGAGCgCCU--UGUUGUaGCa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.