miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5123 3' -64.9 NC_001798.1 + 138800 1.11 0.000353
Target:  5'- cGCCCCCAGGCGCUGCGUCGCCUCCCCc -3'
miRNA:   3'- -CGGGGGUCCGCGACGCAGCGGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 122453 0.81 0.057647
Target:  5'- cGCCCCCAccagcugucccccgcGGCccagacggcgcuGCUGCGUCGCUUUCCCg -3'
miRNA:   3'- -CGGGGGU---------------CCG------------CGACGCAGCGGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 79991 0.78 0.087496
Target:  5'- gGCCCCCGGGgGUcccagcgccacUGCGUCGCCUUCa- -3'
miRNA:   3'- -CGGGGGUCCgCG-----------ACGCAGCGGAGGgg -5'
5123 3' -64.9 NC_001798.1 + 139285 0.77 0.117704
Target:  5'- cGUCCUCGGGgGCgcauagcgccGCGUCGCCgCCCCg -3'
miRNA:   3'- -CGGGGGUCCgCGa---------CGCAGCGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 434 0.76 0.132968
Target:  5'- cCCCCCGcgcgccacGGgGCUGCGgucccgcggcCGCCUCCCCc -3'
miRNA:   3'- cGGGGGU--------CCgCGACGCa---------GCGGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 80546 0.75 0.142983
Target:  5'- gGCCCggcggggGGGCGCgagGCGUC-CCUCCCCg -3'
miRNA:   3'- -CGGGgg-----UCCGCGa--CGCAGcGGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 1477 0.75 0.161214
Target:  5'- gGCgCgCCGGGCGCcaugGCGUCGCCcgCgCCCg -3'
miRNA:   3'- -CGgG-GGUCCGCGa---CGCAGCGGa-G-GGG- -5'
5123 3' -64.9 NC_001798.1 + 118767 0.74 0.181086
Target:  5'- uUCCCCgcgguaaucacgcGGGUGCUGCccacgcgaaucGUCGCCUgCCCCg -3'
miRNA:   3'- cGGGGG-------------UCCGCGACG-----------CAGCGGA-GGGG- -5'
5123 3' -64.9 NC_001798.1 + 76308 0.74 0.173135
Target:  5'- aGCCCCCAGGCcauccuGCUGCGggaCCUgCUCCa -3'
miRNA:   3'- -CGGGGGUCCG------CGACGCagcGGA-GGGG- -5'
5123 3' -64.9 NC_001798.1 + 4140 0.74 0.169077
Target:  5'- cGCCCCCGGG-GCccucGCGggcaccccCGCCUCCUCg -3'
miRNA:   3'- -CGGGGGUCCgCGa---CGCa-------GCGGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 58894 0.74 0.165103
Target:  5'- aCCCCCggAGGCGC-GCcg-GCCUCCCCg -3'
miRNA:   3'- cGGGGG--UCCGCGaCGcagCGGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 11629 0.74 0.173135
Target:  5'- cGCUCgCGGGCGCggGCGUCccuGUgUCCCCg -3'
miRNA:   3'- -CGGGgGUCCGCGa-CGCAG---CGgAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 5119 0.74 0.183232
Target:  5'- cCCCCCGugcGGUGCgUGCGugugccugugucuuuUCGCCUCUCCg -3'
miRNA:   3'- cGGGGGU---CCGCG-ACGC---------------AGCGGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 54493 0.74 0.165103
Target:  5'- gGCCCCucggaggugCAGGCGCcaccGCGagGaCCUCCCCg -3'
miRNA:   3'- -CGGGG---------GUCCGCGa---CGCagC-GGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 154505 0.73 0.194754
Target:  5'- cCCCCCGcGCGCcGCGgggcUGCCUUCCCg -3'
miRNA:   3'- cGGGGGUcCGCGaCGCa---GCGGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 84504 0.73 0.190249
Target:  5'- uCCCCCGGGCgGCcGcCGUaggGCUUCCCCa -3'
miRNA:   3'- cGGGGGUCCG-CGaC-GCAg--CGGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 47866 0.73 0.204044
Target:  5'- gGCCCCgUGGGCGCcgGCGggCGCucgcacgcccCUCCCCg -3'
miRNA:   3'- -CGGGG-GUCCGCGa-CGCa-GCG----------GAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 134157 0.73 0.19204
Target:  5'- gGCCCCCGGGgccgucgcggccgccCGCgccGCGacggccccggcCGCCUCCCCg -3'
miRNA:   3'- -CGGGGGUCC---------------GCGa--CGCa----------GCGGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 80413 0.73 0.204044
Target:  5'- cGUCCUCGGGCGCaUGUGUCuGCCgagCgCCg -3'
miRNA:   3'- -CGGGGGUCCGCG-ACGCAG-CGGa--GgGG- -5'
5123 3' -64.9 NC_001798.1 + 167 0.73 0.194754
Target:  5'- cCCCCCGcGCGCcGCGgggcUGCCUUCCCg -3'
miRNA:   3'- cGGGGGUcCGCGaCGCa---GCGGAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.