miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5123 3' -64.9 NC_001798.1 + 128 0.66 0.531351
Target:  5'- uCCCCCGgagccGGcCGCUcccccGCGggCGCCgCCCCu -3'
miRNA:   3'- cGGGGGU-----CC-GCGA-----CGCa-GCGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 167 0.73 0.194754
Target:  5'- cCCCCCGcGCGCcGCGgggcUGCCUUCCCg -3'
miRNA:   3'- cGGGGGUcCGCGaCGCa---GCGGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 434 0.76 0.132968
Target:  5'- cCCCCCGcgcgccacGGgGCUGCGgucccgcggcCGCCUCCCCc -3'
miRNA:   3'- cGGGGGU--------CCgCGACGCa---------GCGGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 654 0.68 0.433796
Target:  5'- cCCCCgCGGGCGCgggagacGUGcCGCCcgCCCg -3'
miRNA:   3'- cGGGG-GUCCGCGa------CGCaGCGGa-GGGg -5'
5123 3' -64.9 NC_001798.1 + 1354 0.69 0.354782
Target:  5'- aGCuCCgCCGGGCcgccGCgcacgGCGUCGCg-CCCCa -3'
miRNA:   3'- -CG-GG-GGUCCG----CGa----CGCAGCGgaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 1424 0.71 0.256399
Target:  5'- gGCCCCagcgcgcgCAGGCGCggUGCGagugCGCCUCgUCCu -3'
miRNA:   3'- -CGGGG--------GUCCGCG--ACGCa---GCGGAG-GGG- -5'
5123 3' -64.9 NC_001798.1 + 1477 0.75 0.161214
Target:  5'- gGCgCgCCGGGCGCcaugGCGUCGCCcgCgCCCg -3'
miRNA:   3'- -CGgG-GGUCCGCGa---CGCAGCGGa-G-GGG- -5'
5123 3' -64.9 NC_001798.1 + 2107 0.69 0.377396
Target:  5'- cGCCCCC-GGCGCggcccGCGgccagGuCCUCgCCCg -3'
miRNA:   3'- -CGGGGGuCCGCGa----CGCag---C-GGAG-GGG- -5'
5123 3' -64.9 NC_001798.1 + 2396 0.68 0.404172
Target:  5'- gGCCUCCAGG-GCgGCGgccgagggCGCCggcguguggcugggCCCCg -3'
miRNA:   3'- -CGGGGGUCCgCGaCGCa-------GCGGa-------------GGGG- -5'
5123 3' -64.9 NC_001798.1 + 2633 0.7 0.319259
Target:  5'- cGCCCuggCCGGggcggggcucuuGCGCuUGCG-CGCCUCCCg -3'
miRNA:   3'- -CGGG---GGUC------------CGCG-ACGCaGCGGAGGGg -5'
5123 3' -64.9 NC_001798.1 + 2785 0.66 0.540648
Target:  5'- aGCUCagCAGGCGCgggcuccGCGgcagCGCCgggcccagggCCCCg -3'
miRNA:   3'- -CGGGg-GUCCGCGa------CGCa---GCGGa---------GGGG- -5'
5123 3' -64.9 NC_001798.1 + 3001 0.69 0.362213
Target:  5'- gGgCCCCGGGCGCgggggcgcgGCGg-GCCgggCUCCg -3'
miRNA:   3'- -CgGGGGUCCGCGa--------CGCagCGGa--GGGG- -5'
5123 3' -64.9 NC_001798.1 + 3052 0.66 0.549998
Target:  5'- gGCCgCCAGGuCGC--CGUCGaagcCCUCCgCCa -3'
miRNA:   3'- -CGGgGGUCC-GCGacGCAGC----GGAGG-GG- -5'
5123 3' -64.9 NC_001798.1 + 3196 0.67 0.485829
Target:  5'- gGCCCCgGccGGCGCggagGCGggcgcggCGCUcaggcgCCCCa -3'
miRNA:   3'- -CGGGGgU--CCGCGa---CGCa------GCGGa-----GGGG- -5'
5123 3' -64.9 NC_001798.1 + 3663 0.73 0.213716
Target:  5'- cGUCCCCGGGCGCcacgcGCGgguucuggaGCCaCCCCa -3'
miRNA:   3'- -CGGGGGUCCGCGa----CGCag-------CGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 3775 0.66 0.522113
Target:  5'- cGCCCacaCGGGCGCcGgGgCGCCcgaggCCUCg -3'
miRNA:   3'- -CGGGg--GUCCGCGaCgCaGCGGa----GGGG- -5'
5123 3' -64.9 NC_001798.1 + 3838 0.69 0.354782
Target:  5'- cGCCCCCcagAGGCcgggGCgGCuGUCGCCcagCCCg -3'
miRNA:   3'- -CGGGGG---UCCG----CGaCG-CAGCGGa--GGGg -5'
5123 3' -64.9 NC_001798.1 + 3885 0.68 0.393002
Target:  5'- cGCgCCCCGGGgGCgGgGg-GCCggCCCCg -3'
miRNA:   3'- -CG-GGGGUCCgCGaCgCagCGGa-GGGG- -5'
5123 3' -64.9 NC_001798.1 + 4140 0.74 0.169077
Target:  5'- cGCCCCCGGG-GCccucGCGggcaccccCGCCUCCUCg -3'
miRNA:   3'- -CGGGGGUCCgCGa---CGCa-------GCGGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 4458 0.66 0.549998
Target:  5'- cGCCCCgCGGacCGCgGaCGUCGUCUCCgguCCg -3'
miRNA:   3'- -CGGGG-GUCc-GCGaC-GCAGCGGAGG---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.