miRNA display CGI


Results 21 - 40 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5123 3' -64.9 NC_001798.1 + 4712 0.67 0.450789
Target:  5'- cGCCgUCCGcGGCagGCU-CGUCgacgGCCUCCCCg -3'
miRNA:   3'- -CGG-GGGU-CCG--CGAcGCAG----CGGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 5119 0.74 0.183232
Target:  5'- cCCCCCGugcGGUGCgUGCGugugccugugucuuuUCGCCUCUCCg -3'
miRNA:   3'- cGGGGGU---CCGCG-ACGC---------------AGCGGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 5331 0.71 0.286473
Target:  5'- cGCCCCCAGGUGgaaccgcauuaUGCG-CGgCCccgCCCCg -3'
miRNA:   3'- -CGGGGGUCCGCg----------ACGCaGC-GGa--GGGG- -5'
5123 3' -64.9 NC_001798.1 + 5446 0.67 0.468141
Target:  5'- aGCgCCC-GGCGCggGCGgcuucCGCUUCCgCCc -3'
miRNA:   3'- -CGgGGGuCCGCGa-CGCa----GCGGAGG-GG- -5'
5123 3' -64.9 NC_001798.1 + 5569 0.68 0.433796
Target:  5'- gGCCCCCgccggccccaaAGGgGCcgGCGagGUCgCCCCg -3'
miRNA:   3'- -CGGGGG-----------UCCgCGa-CGCagCGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 9645 0.67 0.494792
Target:  5'- cGCCCCgAGGCGCaGCGg-GCCgcgCgCg -3'
miRNA:   3'- -CGGGGgUCCGCGaCGCagCGGa--GgGg -5'
5123 3' -64.9 NC_001798.1 + 11041 0.65 0.555632
Target:  5'- cCCCCCGGGCcCcGCccauccauuaccCGCCUCCCa -3'
miRNA:   3'- cGGGGGUCCGcGaCGca----------GCGGAGGGg -5'
5123 3' -64.9 NC_001798.1 + 11629 0.74 0.173135
Target:  5'- cGCUCgCGGGCGCggGCGUCccuGUgUCCCCg -3'
miRNA:   3'- -CGGGgGUCCGCGa-CGCAG---CGgAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 14787 0.67 0.450789
Target:  5'- cGCaCgCUCGGGUGC-GCGuaUCGCCUgcgCCCCg -3'
miRNA:   3'- -CG-G-GGGUCCGCGaCGC--AGCGGA---GGGG- -5'
5123 3' -64.9 NC_001798.1 + 15555 0.69 0.340245
Target:  5'- cGgCCCCGGGCGUUGC--CGCCgCCgCg -3'
miRNA:   3'- -CgGGGGUCCGCGACGcaGCGGaGGgG- -5'
5123 3' -64.9 NC_001798.1 + 18602 0.68 0.433796
Target:  5'- cCCCCCGGGUcC-GCG-CGCCgUCCCg -3'
miRNA:   3'- cGGGGGUCCGcGaCGCaGCGG-AGGGg -5'
5123 3' -64.9 NC_001798.1 + 21946 0.69 0.354782
Target:  5'- cGCCCCCuuuGGGCGgaGCGcgggaugaCGCgggCCCCg -3'
miRNA:   3'- -CGGGGG---UCCGCgaCGCa-------GCGga-GGGG- -5'
5123 3' -64.9 NC_001798.1 + 22397 0.69 0.369751
Target:  5'- -aCCCCggcgagccgGGGCGCggcgGCGUCGaucgcuCCUCCuCCg -3'
miRNA:   3'- cgGGGG---------UCCGCGa---CGCAGC------GGAGG-GG- -5'
5123 3' -64.9 NC_001798.1 + 22783 0.67 0.485829
Target:  5'- cGUCUCCGGGcCGCgGCGgagaCGaCCggcggCCCCg -3'
miRNA:   3'- -CGGGGGUCC-GCGaCGCa---GC-GGa----GGGG- -5'
5123 3' -64.9 NC_001798.1 + 23351 0.69 0.369751
Target:  5'- cGCCCCCcgccGGCGCU-CGgcCGCCUCUg- -3'
miRNA:   3'- -CGGGGGu---CCGCGAcGCa-GCGGAGGgg -5'
5123 3' -64.9 NC_001798.1 + 23827 0.7 0.296667
Target:  5'- cGCCCCCgGGGCGCgugcuguacgGCGggcugggcgacaGCCgCCCCg -3'
miRNA:   3'- -CGGGGG-UCCGCGa---------CGCag----------CGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 24481 0.71 0.2622
Target:  5'- cGCCCUgGGGCGCcugagcgccGCGccCGCCUCCgCg -3'
miRNA:   3'- -CGGGGgUCCGCGa--------CGCa-GCGGAGGgG- -5'
5123 3' -64.9 NC_001798.1 + 24720 0.69 0.382034
Target:  5'- gGCCCgCGGGCGCggccGCccCGCCgcacgccgacgcgCCCCg -3'
miRNA:   3'- -CGGGgGUCCGCGa---CGcaGCGGa------------GGGG- -5'
5123 3' -64.9 NC_001798.1 + 25077 0.71 0.268107
Target:  5'- cGCCCCggccaGGGCGCcgccggGCGgcgccccgCGCC-CCCCg -3'
miRNA:   3'- -CGGGGg----UCCGCGa-----CGCa-------GCGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 25211 0.7 0.299259
Target:  5'- cGCgCCCCGcGGCGCUGaccCGCCggCCCg -3'
miRNA:   3'- -CG-GGGGU-CCGCGACgcaGCGGagGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.