miRNA display CGI


Results 21 - 40 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5123 3' -64.9 NC_001798.1 + 80413 0.73 0.204044
Target:  5'- cGUCCUCGGGCGCaUGUGUCuGCCgagCgCCg -3'
miRNA:   3'- -CGGGGGUCCGCG-ACGCAG-CGGa--GgGG- -5'
5123 3' -64.9 NC_001798.1 + 126424 0.73 0.212732
Target:  5'- gGCCCCC-GGCcCUGCGgccaagcuaaggCGCCcgCCCCu -3'
miRNA:   3'- -CGGGGGuCCGcGACGCa-----------GCGGa-GGGG- -5'
5123 3' -64.9 NC_001798.1 + 3663 0.73 0.213716
Target:  5'- cGUCCCCGGGCGCcacgcGCGgguucuggaGCCaCCCCa -3'
miRNA:   3'- -CGGGGGUCCGCGa----CGCag-------CGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 121463 0.73 0.213716
Target:  5'- cGUCCCCA-GCGCggGCGggcuguUCGUCUCCCUg -3'
miRNA:   3'- -CGGGGGUcCGCGa-CGC------AGCGGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 94974 0.73 0.218698
Target:  5'- cCCCCCAGcGUGCagGCGgcggcCGCCUgggCCCCg -3'
miRNA:   3'- cGGGGGUC-CGCGa-CGCa----GCGGA---GGGG- -5'
5123 3' -64.9 NC_001798.1 + 153065 0.72 0.22896
Target:  5'- cGCCCCCuggggcGGGCGgaGCGgcggggcggCGCCgggCCCUc -3'
miRNA:   3'- -CGGGGG------UCCGCgaCGCa--------GCGGa--GGGG- -5'
5123 3' -64.9 NC_001798.1 + 150689 0.72 0.234242
Target:  5'- cGCCCaCCcGcGCGcCUGCGcgCGCC-CCCCg -3'
miRNA:   3'- -CGGG-GGuC-CGC-GACGCa-GCGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 122138 0.72 0.234242
Target:  5'- gGCCCCCGGGcCGCggGCGagGaCgUCCUCa -3'
miRNA:   3'- -CGGGGGUCC-GCGa-CGCagC-GgAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 48865 0.72 0.239626
Target:  5'- cGCCgCCGGGCGCU-CGggcacgucucauUCGCCUCUCg -3'
miRNA:   3'- -CGGgGGUCCGCGAcGC------------AGCGGAGGGg -5'
5123 3' -64.9 NC_001798.1 + 124138 0.72 0.239626
Target:  5'- cGCCCCCGccguGGCGgaggccuguccCUGCGUCGCC-CCg- -3'
miRNA:   3'- -CGGGGGU----CCGC-----------GACGCAGCGGaGGgg -5'
5123 3' -64.9 NC_001798.1 + 153422 0.72 0.241808
Target:  5'- cGCCCaggacccccgucgggCCAGGCGC-GCGgcCGUCUCCCa -3'
miRNA:   3'- -CGGG---------------GGUCCGCGaCGCa-GCGGAGGGg -5'
5123 3' -64.9 NC_001798.1 + 1424 0.71 0.256399
Target:  5'- gGCCCCagcgcgcgCAGGCGCggUGCGagugCGCCUCgUCCu -3'
miRNA:   3'- -CGGGG--------GUCCGCG--ACGCa---GCGGAG-GGG- -5'
5123 3' -64.9 NC_001798.1 + 132143 0.71 0.256399
Target:  5'- cGCCgCCGGGgGCcgGCGggcggggCGCCcCCCCc -3'
miRNA:   3'- -CGGgGGUCCgCGa-CGCa------GCGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 115334 0.71 0.261615
Target:  5'- cGCCCCC-GGCcacccggagccccGC-GCGUUcCCUCCCCg -3'
miRNA:   3'- -CGGGGGuCCG-------------CGaCGCAGcGGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 145538 0.71 0.2622
Target:  5'- cGCCCCCGcccGGcCGCccGCGUcgCGCCggcgCCCCc -3'
miRNA:   3'- -CGGGGGU---CC-GCGa-CGCA--GCGGa---GGGG- -5'
5123 3' -64.9 NC_001798.1 + 29986 0.71 0.2622
Target:  5'- aCCCCCguGGGCcgUGCGcCGCC-CCCCg -3'
miRNA:   3'- cGGGGG--UCCGcgACGCaGCGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 24481 0.71 0.2622
Target:  5'- cGCCCUgGGGCGCcugagcgccGCGccCGCCUCCgCg -3'
miRNA:   3'- -CGGGGgUCCGCGa--------CGCa-GCGGAGGgG- -5'
5123 3' -64.9 NC_001798.1 + 25077 0.71 0.268107
Target:  5'- cGCCCCggccaGGGCGCcgccggGCGgcgccccgCGCC-CCCCg -3'
miRNA:   3'- -CGGGGg----UCCGCGa-----CGCa-------GCGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 28378 0.71 0.268107
Target:  5'- cGCCCgCGGacGCGCcGCGcgggaagguaCGCCUCCCCu -3'
miRNA:   3'- -CGGGgGUC--CGCGaCGCa---------GCGGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 131340 0.71 0.280243
Target:  5'- cGCgCCCCGGGCGC-GaCGUCGgCgCCCg -3'
miRNA:   3'- -CG-GGGGUCCGCGaC-GCAGCgGaGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.