miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5123 3' -64.9 NC_001798.1 + 154505 0.73 0.194754
Target:  5'- cCCCCCGcGCGCcGCGgggcUGCCUUCCCg -3'
miRNA:   3'- cGGGGGUcCGCGaCGCa---GCGGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 154466 0.66 0.531351
Target:  5'- uCCCCCGgagccGGcCGCUcccccGCGggCGCCgCCCCu -3'
miRNA:   3'- cGGGGGU-----CC-GCGA-----CGCa-GCGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 154094 0.69 0.369751
Target:  5'- aGCgCCgGGGCGCgGCcggCGCCggggaCCCCg -3'
miRNA:   3'- -CGgGGgUCCGCGaCGca-GCGGa----GGGG- -5'
5123 3' -64.9 NC_001798.1 + 153422 0.72 0.241808
Target:  5'- cGCCCaggacccccgucgggCCAGGCGC-GCGgcCGUCUCCCa -3'
miRNA:   3'- -CGGG---------------GGUCCGCGaCGCa-GCGGAGGGg -5'
5123 3' -64.9 NC_001798.1 + 153065 0.72 0.22896
Target:  5'- cGCCCCCuggggcGGGCGgaGCGgcggggcggCGCCgggCCCUc -3'
miRNA:   3'- -CGGGGG------UCCGCgaCGCa--------GCGGa--GGGG- -5'
5123 3' -64.9 NC_001798.1 + 152006 0.67 0.468141
Target:  5'- cGCUCUCGGGCuccuccCUGCcucccUCGCCcCCCCa -3'
miRNA:   3'- -CGGGGGUCCGc-----GACGc----AGCGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 150689 0.72 0.234242
Target:  5'- cGCCCaCCcGcGCGcCUGCGcgCGCC-CCCCg -3'
miRNA:   3'- -CGGG-GGuC-CGC-GACGCa-GCGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 150340 0.66 0.531351
Target:  5'- cGCgaCCgGGGCGC-GCGgugCGCgUCCaCCg -3'
miRNA:   3'- -CGg-GGgUCCGCGaCGCa--GCGgAGG-GG- -5'
5123 3' -64.9 NC_001798.1 + 149659 0.67 0.485829
Target:  5'- ---gCCGGGCGCcGgGUCGCgggCCCCg -3'
miRNA:   3'- cgggGGUCCGCGaCgCAGCGga-GGGG- -5'
5123 3' -64.9 NC_001798.1 + 149234 0.67 0.442246
Target:  5'- uCCCCguGGCccGCggggGCGUCGCCggCCg -3'
miRNA:   3'- cGGGGguCCG--CGa---CGCAGCGGagGGg -5'
5123 3' -64.9 NC_001798.1 + 148503 0.68 0.393002
Target:  5'- cGUCCCCGGGgGCagagggcgugcaUGCGUugugauucaacCGCCcucgCCCCc -3'
miRNA:   3'- -CGGGGGUCCgCG------------ACGCA-----------GCGGa---GGGG- -5'
5123 3' -64.9 NC_001798.1 + 147946 0.67 0.442246
Target:  5'- cGCCCCCAcGCGCcG-GUCaCCcCCCCc -3'
miRNA:   3'- -CGGGGGUcCGCGaCgCAGcGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 147221 0.69 0.347459
Target:  5'- gGCCCCC-GGCGgaGCGcggggGCCccggggCCCCg -3'
miRNA:   3'- -CGGGGGuCCGCgaCGCag---CGGa-----GGGG- -5'
5123 3' -64.9 NC_001798.1 + 147171 0.69 0.354782
Target:  5'- aGCCgCCC-GGCGCcggGCGgaaggCGUC-CCCCg -3'
miRNA:   3'- -CGG-GGGuCCGCGa--CGCa----GCGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 147016 0.66 0.512938
Target:  5'- aCCCCCGGGCGg-GCcggggcuugGcCGCCgaggugcgCCCCg -3'
miRNA:   3'- cGGGGGUCCGCgaCG---------CaGCGGa-------GGGG- -5'
5123 3' -64.9 NC_001798.1 + 145538 0.71 0.2622
Target:  5'- cGCCCCCGcccGGcCGCccGCGUcgCGCCggcgCCCCc -3'
miRNA:   3'- -CGGGGGU---CC-GCGa-CGCA--GCGGa---GGGG- -5'
5123 3' -64.9 NC_001798.1 + 145496 0.7 0.312483
Target:  5'- cGCCCCCGcccGGcCGCcGCG-CGCC-CCCg -3'
miRNA:   3'- -CGGGGGU---CC-GCGaCGCaGCGGaGGGg -5'
5123 3' -64.9 NC_001798.1 + 145454 0.7 0.312483
Target:  5'- cGCCCCCGcccGGcCGCcGCG-CGCC-CCCg -3'
miRNA:   3'- -CGGGGGU---CC-GCGaCGCaGCGGaGGGg -5'
5123 3' -64.9 NC_001798.1 + 145412 0.7 0.312483
Target:  5'- cGCCCCCGcccGGcCGCcGCG-CGCC-CCCg -3'
miRNA:   3'- -CGGGGGU---CC-GCGaCGCaGCGGaGGGg -5'
5123 3' -64.9 NC_001798.1 + 142487 0.67 0.450789
Target:  5'- gGCCCCCGaggcGGCGCgggggUGCGauaaCGCa-CCCCu -3'
miRNA:   3'- -CGGGGGU----CCGCG-----ACGCa---GCGgaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.