miRNA display CGI


Results 41 - 60 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5123 3' -64.9 NC_001798.1 + 93084 0.67 0.494792
Target:  5'- aGCCCCagcgGGGCGCgcGCGaCGCCgggaacaagggCCCg -3'
miRNA:   3'- -CGGGGg---UCCGCGa-CGCaGCGGa----------GGGg -5'
5123 3' -64.9 NC_001798.1 + 9645 0.67 0.494792
Target:  5'- cGCCCCgAGGCGCaGCGg-GCCgcgCgCg -3'
miRNA:   3'- -CGGGGgUCCGCGaCGCagCGGa--GgGg -5'
5123 3' -64.9 NC_001798.1 + 67140 0.67 0.494792
Target:  5'- cGCCCCUggcaucgcgacGGGCGCaGCacUCGUggCCCCa -3'
miRNA:   3'- -CGGGGG-----------UCCGCGaCGc-AGCGgaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 138414 0.67 0.494792
Target:  5'- aGCCaCCCc-GCGCUcGCuGUCGCUcuugcgCCCCa -3'
miRNA:   3'- -CGG-GGGucCGCGA-CG-CAGCGGa-----GGGG- -5'
5123 3' -64.9 NC_001798.1 + 62440 0.67 0.493893
Target:  5'- aGCCCCCggacgucgccgguGGGcCGCgcgacgGCGcccggUCGuCCUCCUCg -3'
miRNA:   3'- -CGGGGG-------------UCC-GCGa-----CGC-----AGC-GGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 114600 0.67 0.492096
Target:  5'- gGCCgaCCAGaUGCUGCacGUgcuguuggagaaggCGCCUCCCCu -3'
miRNA:   3'- -CGGg-GGUCcGCGACG--CA--------------GCGGAGGGG- -5'
5123 3' -64.9 NC_001798.1 + 116985 0.67 0.492096
Target:  5'- cCCCCCGgcccugcgcgaccuGGCGC-GCGaCGUC-CCCCu -3'
miRNA:   3'- cGGGGGU--------------CCGCGaCGCaGCGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 71110 0.67 0.489405
Target:  5'- cGCCCCCGgggacgcugauGGCGC-GCGUgcggacggacgcggcCGUCUucgaCCCCg -3'
miRNA:   3'- -CGGGGGU-----------CCGCGaCGCA---------------GCGGA----GGGG- -5'
5123 3' -64.9 NC_001798.1 + 22783 0.67 0.485829
Target:  5'- cGUCUCCGGGcCGCgGCGgagaCGaCCggcggCCCCg -3'
miRNA:   3'- -CGGGGGUCC-GCGaCGCa---GC-GGa----GGGG- -5'
5123 3' -64.9 NC_001798.1 + 115803 0.67 0.485829
Target:  5'- uGCCCCU-GGCGCUGUGuccgguggcguuUCGUgaCgCCCg -3'
miRNA:   3'- -CGGGGGuCCGCGACGC------------AGCGgaG-GGG- -5'
5123 3' -64.9 NC_001798.1 + 3196 0.67 0.485829
Target:  5'- gGCCCCgGccGGCGCggagGCGggcgcggCGCUcaggcgCCCCa -3'
miRNA:   3'- -CGGGGgU--CCGCGa---CGCa------GCGGa-----GGGG- -5'
5123 3' -64.9 NC_001798.1 + 51182 0.67 0.485829
Target:  5'- --gCCCGGGCG--GCGgCGCCcCCCCg -3'
miRNA:   3'- cggGGGUCCGCgaCGCaGCGGaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 113029 0.67 0.485829
Target:  5'- cGCCgCCAgcacuacuuucGGUuuuGCUGCcUCGCCggcUCCCCg -3'
miRNA:   3'- -CGGgGGU-----------CCG---CGACGcAGCGG---AGGGG- -5'
5123 3' -64.9 NC_001798.1 + 149659 0.67 0.485829
Target:  5'- ---gCCGGGCGCcGgGUCGCgggCCCCg -3'
miRNA:   3'- cgggGGUCCGCGaCgCAGCGga-GGGG- -5'
5123 3' -64.9 NC_001798.1 + 59705 0.67 0.480489
Target:  5'- cGUCUUCGGGCGCUuggugGCGUCGUccgcggggacaacuuCggCCCCg -3'
miRNA:   3'- -CGGGGGUCCGCGA-----CGCAGCG---------------Ga-GGGG- -5'
5123 3' -64.9 NC_001798.1 + 79380 0.67 0.476944
Target:  5'- gGCCagaCGGGCGCgggcGCGgaguccgCGCCcgcgCCCCu -3'
miRNA:   3'- -CGGgg-GUCCGCGa---CGCa------GCGGa---GGGG- -5'
5123 3' -64.9 NC_001798.1 + 68774 0.67 0.476944
Target:  5'- gGCCugCCCGGGUgGCcggugUGUGUgGCCUCCUg -3'
miRNA:   3'- -CGG--GGGUCCG-CG-----ACGCAgCGGAGGGg -5'
5123 3' -64.9 NC_001798.1 + 98482 0.67 0.476944
Target:  5'- cGCCCCCAgacuagcgggcGGCgGgaGCGaCGCgC-CCCCg -3'
miRNA:   3'- -CGGGGGU-----------CCG-CgaCGCaGCG-GaGGGG- -5'
5123 3' -64.9 NC_001798.1 + 129352 0.67 0.476944
Target:  5'- cGCCCgCCGGGC-CUgGCGggGCC-CCCg -3'
miRNA:   3'- -CGGG-GGUCCGcGA-CGCagCGGaGGGg -5'
5123 3' -64.9 NC_001798.1 + 52110 0.67 0.476944
Target:  5'- cGCCaCCgGGGCuCUGC-UCGCCcgcuucaaCCCCg -3'
miRNA:   3'- -CGG-GGgUCCGcGACGcAGCGGa-------GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.