miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5127 5' -64.3 NC_001798.1 + 136874 1.09 0.000579
Target:  5'- gCGAGGGCGUGGCGUGGCUCCGGGGACa -3'
miRNA:   3'- -GCUCCCGCACCGCACCGAGGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 57523 0.86 0.025663
Target:  5'- gGGGGGCGUgGGUGUGGUUCgGGGGGCg -3'
miRNA:   3'- gCUCCCGCA-CCGCACCGAGgCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 97536 0.83 0.040831
Target:  5'- gGGGGGCGgaGGCGUGGCg-CGGGGACg -3'
miRNA:   3'- gCUCCCGCa-CCGCACCGagGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 36300 0.77 0.11791
Target:  5'- cCGuGGGUGUGGCGgcggGGCgcgggCCGGGGcCg -3'
miRNA:   3'- -GCuCCCGCACCGCa---CCGa----GGCCCCuG- -5'
5127 5' -64.3 NC_001798.1 + 43475 0.76 0.136574
Target:  5'- gCGGGGGCG-GGCGUgagGGCcgCCGGGG-Ca -3'
miRNA:   3'- -GCUCCCGCaCCGCA---CCGa-GGCCCCuG- -5'
5127 5' -64.3 NC_001798.1 + 29907 0.75 0.154163
Target:  5'- uGGGGGUGgucgcgGGCGgugGGCU-CGGGGGCg -3'
miRNA:   3'- gCUCCCGCa-----CCGCa--CCGAgGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 148050 0.74 0.17586
Target:  5'- gCGGGGGgGUGGUgguagugGUGGCggaaggaaacgggCCGGGGGCc -3'
miRNA:   3'- -GCUCCCgCACCG-------CACCGa------------GGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 43961 0.74 0.186594
Target:  5'- uGAGGGUGUcggGGCGUGGgUCgUGGGGGa -3'
miRNA:   3'- gCUCCCGCA---CCGCACCgAG-GCCCCUg -5'
5127 5' -64.3 NC_001798.1 + 3012 0.74 0.195593
Target:  5'- gCGGGGGCGcGGCGggccgGGCUCCGGccagccccGGCa -3'
miRNA:   3'- -GCUCCCGCaCCGCa----CCGAGGCCc-------CUG- -5'
5127 5' -64.3 NC_001798.1 + 151582 0.74 0.195593
Target:  5'- uCGGcGGGCGUGGgGcugcccUGGCgcucggCCGGGGGCc -3'
miRNA:   3'- -GCU-CCCGCACCgC------ACCGa-----GGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 39856 0.73 0.209801
Target:  5'- --cGGGCGaGGCGUcgaGGCUUCGGGGGu -3'
miRNA:   3'- gcuCCCGCaCCGCA---CCGAGGCCCCUg -5'
5127 5' -64.3 NC_001798.1 + 11709 0.73 0.209801
Target:  5'- gGAGGG-GUGGguCGggaGGCUCCGGGGGu -3'
miRNA:   3'- gCUCCCgCACC--GCa--CCGAGGCCCCUg -5'
5127 5' -64.3 NC_001798.1 + 15190 0.73 0.22489
Target:  5'- gGGGGGUGggggGGC-UGGCgagCCGGGGGg -3'
miRNA:   3'- gCUCCCGCa---CCGcACCGa--GGCCCCUg -5'
5127 5' -64.3 NC_001798.1 + 23556 0.73 0.23012
Target:  5'- gCGGGGGUGcccGCGagGGCcCCGGGGGCg -3'
miRNA:   3'- -GCUCCCGCac-CGCa-CCGaGGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 18220 0.72 0.24089
Target:  5'- cCGGGGGaCGgugGGCGggaagGGUggaugguuUCCGGGGGCc -3'
miRNA:   3'- -GCUCCC-GCa--CCGCa----CCG--------AGGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 15495 0.72 0.24643
Target:  5'- uGGGGGC-UGGUGUGGUg--GGGGGCg -3'
miRNA:   3'- gCUCCCGcACCGCACCGaggCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 56187 0.72 0.24643
Target:  5'- gGGGGGUGggguggGGUGUGGUggguaCgGGGGACg -3'
miRNA:   3'- gCUCCCGCa-----CCGCACCGa----GgCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 85823 0.72 0.252076
Target:  5'- aCGGGGGgG-GGCGggGGCgggCGGGGGCu -3'
miRNA:   3'- -GCUCCCgCaCCGCa-CCGag-GCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 111645 0.72 0.257828
Target:  5'- uCGGGGGCGcucGGCGggggGGCggaagagacgCuCGGGGACa -3'
miRNA:   3'- -GCUCCCGCa--CCGCa---CCGa---------G-GCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 2581 0.72 0.257828
Target:  5'- gGGGGGCGUccGCGcGGCUCUucuucgGGGGGCg -3'
miRNA:   3'- gCUCCCGCAc-CGCaCCGAGG------CCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.