miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5127 5' -64.3 NC_001798.1 + 57 0.68 0.454168
Target:  5'- gGGGGGCGcgaaGGCGggcGGCggCGGcGGGCg -3'
miRNA:   3'- gCUCCCGCa---CCGCa--CCGagGCC-CCUG- -5'
5127 5' -64.3 NC_001798.1 + 2413 0.69 0.35721
Target:  5'- cCGAGGGCGccGGCGUguGGCUgggccCCGGcGGCu -3'
miRNA:   3'- -GCUCCCGCa-CCGCA--CCGA-----GGCCcCUG- -5'
5127 5' -64.3 NC_001798.1 + 2537 0.67 0.462881
Target:  5'- -cGGGGCGgggGGCGcGGCccCCGcGGGAg -3'
miRNA:   3'- gcUCCCGCa--CCGCaCCGa-GGC-CCCUg -5'
5127 5' -64.3 NC_001798.1 + 2581 0.72 0.257828
Target:  5'- gGGGGGCGUccGCGcGGCUCUucuucgGGGGGCg -3'
miRNA:   3'- gCUCCCGCAc-CGCaCCGAGG------CCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 3012 0.74 0.195593
Target:  5'- gCGGGGGCGcGGCGggccgGGCUCCGGccagccccGGCa -3'
miRNA:   3'- -GCUCCCGCaCCGCa----CCGAGGCCc-------CUG- -5'
5127 5' -64.3 NC_001798.1 + 3891 0.67 0.498574
Target:  5'- cCGGGGGCGgggGGCc-GGCcCCGGGccacGGCu -3'
miRNA:   3'- -GCUCCCGCa--CCGcaCCGaGGCCC----CUG- -5'
5127 5' -64.3 NC_001798.1 + 4399 0.66 0.554237
Target:  5'- uGGuGGUGUcGGCGgGGCgCCGGGGGu -3'
miRNA:   3'- gCUcCCGCA-CCGCaCCGaGGCCCCUg -5'
5127 5' -64.3 NC_001798.1 + 9079 0.68 0.431939
Target:  5'- aGGGGGCGUccacGGCGUGGagggCCacgggaaaggccgcgGGGGAg -3'
miRNA:   3'- gCUCCCGCA----CCGCACCga--GG---------------CCCCUg -5'
5127 5' -64.3 NC_001798.1 + 10594 0.67 0.505861
Target:  5'- aCGGGGGacuguaugcuaUGGCGagcGGUUCCGGGGcGCg -3'
miRNA:   3'- -GCUCCCgc---------ACCGCa--CCGAGGCCCC-UG- -5'
5127 5' -64.3 NC_001798.1 + 11658 0.7 0.349813
Target:  5'- cCGGGGGCG-GGgGUcGGgUCuCGGGGGg -3'
miRNA:   3'- -GCUCCCGCaCCgCA-CCgAG-GCCCCUg -5'
5127 5' -64.3 NC_001798.1 + 11709 0.73 0.209801
Target:  5'- gGAGGG-GUGGguCGggaGGCUCCGGGGGu -3'
miRNA:   3'- gCUCCCgCACC--GCa--CCGAGGCCCCUg -5'
5127 5' -64.3 NC_001798.1 + 12711 0.7 0.335348
Target:  5'- uGGGGGCGgcgggGGCGUGGUg-CGGcGcGACg -3'
miRNA:   3'- gCUCCCGCa----CCGCACCGagGCC-C-CUG- -5'
5127 5' -64.3 NC_001798.1 + 14990 0.69 0.372332
Target:  5'- --uGGGCGggggGGCGaGGCgugUUGGGGGCg -3'
miRNA:   3'- gcuCCCGCa---CCGCaCCGa--GGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 15039 0.67 0.498574
Target:  5'- gCGGGaGCGUggGGCGgaugGGC-CCGGGGcGCg -3'
miRNA:   3'- -GCUCcCGCA--CCGCa---CCGaGGCCCC-UG- -5'
5127 5' -64.3 NC_001798.1 + 15190 0.73 0.22489
Target:  5'- gGGGGGUGggggGGC-UGGCgagCCGGGGGg -3'
miRNA:   3'- gCUCCCGCa---CCGcACCGa--GGCCCCUg -5'
5127 5' -64.3 NC_001798.1 + 15259 0.67 0.489532
Target:  5'- uGGGGGgGUacgGGCGgugccccgGGUUCCGGGcguGGCg -3'
miRNA:   3'- gCUCCCgCA---CCGCa-------CCGAGGCCC---CUG- -5'
5127 5' -64.3 NC_001798.1 + 15327 0.7 0.349813
Target:  5'- cCGAGGGCcccGGCGcGGUagCgGGGGGCg -3'
miRNA:   3'- -GCUCCCGca-CCGCaCCGa-GgCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 15495 0.72 0.24643
Target:  5'- uGGGGGC-UGGUGUGGUg--GGGGGCg -3'
miRNA:   3'- gCUCCCGcACCGCACCGaggCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 15683 0.66 0.526129
Target:  5'- uCGGGGG-GaGuaGUGGUUgCGGGGGCg -3'
miRNA:   3'- -GCUCCCgCaCcgCACCGAgGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 15918 0.69 0.395019
Target:  5'- aGGGGGCGUacGGacCGUcaucuagGGCcCCGGGGGCc -3'
miRNA:   3'- gCUCCCGCA--CC--GCA-------CCGaGGCCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.