miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5127 5' -64.3 NC_001798.1 + 16070 0.7 0.314479
Target:  5'- uGGGGGCGgcgGGCGU--CUgUGGGGGCa -3'
miRNA:   3'- gCUCCCGCa--CCGCAccGAgGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 18220 0.72 0.24089
Target:  5'- cCGGGGGaCGgugGGCGggaagGGUggaugguuUCCGGGGGCc -3'
miRNA:   3'- -GCUCCC-GCa--CCGCa----CCG--------AGGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 23556 0.73 0.23012
Target:  5'- gCGGGGGUGcccGCGagGGCcCCGGGGGCg -3'
miRNA:   3'- -GCUCCCGCac-CGCa-CCGaGGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 24020 0.72 0.261918
Target:  5'- gCGAuGGG-GUGGCuccagaacccgcgcGUGGCgcCCGGGGACg -3'
miRNA:   3'- -GCU-CCCgCACCG--------------CACCGa-GGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 25583 0.67 0.507691
Target:  5'- --cGGGCGaggaccUGGCcgcgGGCcgcgCCGGGGGCg -3'
miRNA:   3'- gcuCCCGC------ACCGca--CCGa---GGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 26484 0.67 0.480566
Target:  5'- --uGGGCGUcGGCcgcgGGCcgCgCGGGGACg -3'
miRNA:   3'- gcuCCCGCA-CCGca--CCGa-G-GCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 26523 0.67 0.462881
Target:  5'- gCGGcGGGCGgcGGCGUGGagguggUGGGGACc -3'
miRNA:   3'- -GCU-CCCGCa-CCGCACCgag---GCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 26821 0.67 0.507691
Target:  5'- gCGGGGGuCGggcgGGCGgGGgUCgGGcGGGCg -3'
miRNA:   3'- -GCUCCC-GCa---CCGCaCCgAGgCC-CCUG- -5'
5127 5' -64.3 NC_001798.1 + 26866 0.67 0.507691
Target:  5'- gCGGGGGuCGggcgGGCGgGGgUCgGGcGGGCg -3'
miRNA:   3'- -GCUCCC-GCa---CCGCaCCgAGgCC-CCUG- -5'
5127 5' -64.3 NC_001798.1 + 26911 0.67 0.507691
Target:  5'- gCGGGGGuCGggcgGGCGgGGgUCgGGcGGGCg -3'
miRNA:   3'- -GCUCCC-GCa---CCGCaCCgAGgCC-CCUG- -5'
5127 5' -64.3 NC_001798.1 + 26955 0.67 0.507691
Target:  5'- gCGGGGGuCGggcgGGCGgGGgUCgGGcGGGCg -3'
miRNA:   3'- -GCUCCC-GCa---CCGCaCCgAGgCC-CCUG- -5'
5127 5' -64.3 NC_001798.1 + 27000 0.67 0.507691
Target:  5'- gCGGGGGuCGggcgGGCGgGGgUCgGGcGGGCg -3'
miRNA:   3'- -GCUCCC-GCa---CCGCaCCgAGgCC-CCUG- -5'
5127 5' -64.3 NC_001798.1 + 27328 0.66 0.535443
Target:  5'- gGAGGGgGUGGCGgGGaaCCGugugcGGGCg -3'
miRNA:   3'- gCUCCCgCACCGCaCCgaGGCc----CCUG- -5'
5127 5' -64.3 NC_001798.1 + 27388 0.69 0.372332
Target:  5'- gCGAGGGCGagcggUGGUGcgacUGGCgUCUucggGGGGGCg -3'
miRNA:   3'- -GCUCCCGC-----ACCGC----ACCG-AGG----CCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 27488 0.69 0.395817
Target:  5'- gCGGGGGCG-GGCGcgGGaaaaaagccgCgCGGGGGCg -3'
miRNA:   3'- -GCUCCCGCaCCGCa-CCga--------G-GCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 27572 0.71 0.301121
Target:  5'- gCGGGGGaGcGGCc-GGCUCCGGGGGa -3'
miRNA:   3'- -GCUCCCgCaCCGcaCCGAGGCCCCUg -5'
5127 5' -64.3 NC_001798.1 + 28192 0.66 0.535443
Target:  5'- gCGAGGGCG-GGgGgaaGGCgCCGGaGGCc -3'
miRNA:   3'- -GCUCCCGCaCCgCa--CCGaGGCCcCUG- -5'
5127 5' -64.3 NC_001798.1 + 29907 0.75 0.154163
Target:  5'- uGGGGGUGgucgcgGGCGgugGGCU-CGGGGGCg -3'
miRNA:   3'- gCUCCCGCa-----CCGCa--CCGAgGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 30932 0.69 0.372332
Target:  5'- uGAGGGCGgcgggggucgGGCGgggGGCgggCGGGGGu -3'
miRNA:   3'- gCUCCCGCa---------CCGCa--CCGag-GCCCCUg -5'
5127 5' -64.3 NC_001798.1 + 31050 0.71 0.301121
Target:  5'- gCGGGGGuCG-GGCGggggucgGGCacuaaCCGGGGGCu -3'
miRNA:   3'- -GCUCCC-GCaCCGCa------CCGa----GGCCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.