miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5127 5' -64.3 NC_001798.1 + 24020 0.72 0.261918
Target:  5'- gCGAuGGG-GUGGCuccagaacccgcgcGUGGCgcCCGGGGACg -3'
miRNA:   3'- -GCU-CCCgCACCG--------------CACCGa-GGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 105608 0.72 0.263687
Target:  5'- uCGAGGGCGgcgGGCGggcgacgacgGcGCUCCGGGa-- -3'
miRNA:   3'- -GCUCCCGCa--CCGCa---------C-CGAGGCCCcug -5'
5127 5' -64.3 NC_001798.1 + 154099 0.72 0.269653
Target:  5'- -cGGGGCGcGGCc-GGCgCCGGGGACc -3'
miRNA:   3'- gcUCCCGCaCCGcaCCGaGGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 123922 0.72 0.269653
Target:  5'- -cGGGGCGUGcuGUGcccUGGgUCCGGGGGCc -3'
miRNA:   3'- gcUCCCGCAC--CGC---ACCgAGGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 111594 0.71 0.278188
Target:  5'- gGGGGGCccGGCGgGGCggccuccuggagccCCGGGGGCg -3'
miRNA:   3'- gCUCCCGcaCCGCaCCGa-------------GGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 59662 0.71 0.288205
Target:  5'- aGAGGGgG-GGCGacucGGCUCgcgUGGGGGCg -3'
miRNA:   3'- gCUCCCgCaCCGCa---CCGAG---GCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 27572 0.71 0.301121
Target:  5'- gCGGGGGaGcGGCc-GGCUCCGGGGGa -3'
miRNA:   3'- -GCUCCCgCaCCGcaCCGAGGCCCCUg -5'
5127 5' -64.3 NC_001798.1 + 31050 0.71 0.301121
Target:  5'- gCGGGGGuCG-GGCGggggucgGGCacuaaCCGGGGGCu -3'
miRNA:   3'- -GCUCCC-GCaCCGCa------CCGa----GGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 108132 0.71 0.301121
Target:  5'- uGGGGGuCcUGGUG-GGCguugCCGGGGGCc -3'
miRNA:   3'- gCUCCC-GcACCGCaCCGa---GGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 31260 0.71 0.307745
Target:  5'- gCGGGGGUG-GGaucUGGgUCUGGGGGCg -3'
miRNA:   3'- -GCUCCCGCaCCgc-ACCgAGGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 16070 0.7 0.314479
Target:  5'- uGGGGGCGgcgGGCGU--CUgUGGGGGCa -3'
miRNA:   3'- gCUCCCGCa--CCGCAccGAgGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 12711 0.7 0.335348
Target:  5'- uGGGGGCGgcgggGGCGUGGUg-CGGcGcGACg -3'
miRNA:   3'- gCUCCCGCa----CCGCACCGagGCC-C-CUG- -5'
5127 5' -64.3 NC_001798.1 + 15327 0.7 0.349813
Target:  5'- cCGAGGGCcccGGCGcGGUagCgGGGGGCg -3'
miRNA:   3'- -GCUCCCGca-CCGCaCCGa-GgCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 11658 0.7 0.349813
Target:  5'- cCGGGGGCG-GGgGUcGGgUCuCGGGGGg -3'
miRNA:   3'- -GCUCCCGCaCCgCA-CCgAG-GCCCCUg -5'
5127 5' -64.3 NC_001798.1 + 2413 0.69 0.35721
Target:  5'- cCGAGGGCGccGGCGUguGGCUgggccCCGGcGGCu -3'
miRNA:   3'- -GCUCCCGCa-CCGCA--CCGA-----GGCCcCUG- -5'
5127 5' -64.3 NC_001798.1 + 135248 0.69 0.371565
Target:  5'- cCGGGGGCG-GGCG-GGC-CUGGaaaggcuGGACg -3'
miRNA:   3'- -GCUCCCGCaCCGCaCCGaGGCC-------CCUG- -5'
5127 5' -64.3 NC_001798.1 + 27388 0.69 0.372332
Target:  5'- gCGAGGGCGagcggUGGUGcgacUGGCgUCUucggGGGGGCg -3'
miRNA:   3'- -GCUCCCGC-----ACCGC----ACCG-AGG----CCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 149978 0.69 0.372332
Target:  5'- aCGGGGGCGcGGCGcccGCggacgCCGGGG-Cg -3'
miRNA:   3'- -GCUCCCGCaCCGCac-CGa----GGCCCCuG- -5'
5127 5' -64.3 NC_001798.1 + 30932 0.69 0.372332
Target:  5'- uGAGGGCGgcgggggucgGGCGgggGGCgggCGGGGGu -3'
miRNA:   3'- gCUCCCGCa---------CCGCa--CCGag-GCCCCUg -5'
5127 5' -64.3 NC_001798.1 + 14990 0.69 0.372332
Target:  5'- --uGGGCGggggGGCGaGGCgugUUGGGGGCg -3'
miRNA:   3'- gcuCCCGCa---CCGCaCCGa--GGCCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.