miRNA display CGI


Results 1 - 20 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5127 5' -64.3 NC_001798.1 + 154395 0.68 0.454168
Target:  5'- gGGGGGCGcgaaGGCGggcGGCggCGGcGGGCg -3'
miRNA:   3'- gCUCCCGCa---CCGCa--CCGagGCC-CCUG- -5'
5127 5' -64.3 NC_001798.1 + 154099 0.72 0.269653
Target:  5'- -cGGGGCGcGGCc-GGCgCCGGGGACc -3'
miRNA:   3'- gcUCCCGCaCCGcaCCGaGGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 153522 0.66 0.573221
Target:  5'- aCGGGGGuCGgaggGGCGUcaggGGgUCgGaGGGGCg -3'
miRNA:   3'- -GCUCCC-GCa---CCGCA----CCgAGgC-CCCUG- -5'
5127 5' -64.3 NC_001798.1 + 151582 0.74 0.195593
Target:  5'- uCGGcGGGCGUGGgGcugcccUGGCgcucggCCGGGGGCc -3'
miRNA:   3'- -GCU-CCCGCACCgC------ACCGa-----GGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 150418 0.68 0.453301
Target:  5'- aCGGGGGCGgcGGCGgcgcggGGCggacUCCGgacgcgcGGGGCg -3'
miRNA:   3'- -GCUCCCGCa-CCGCa-----CCG----AGGC-------CCCUG- -5'
5127 5' -64.3 NC_001798.1 + 150200 0.69 0.380054
Target:  5'- gGGGGGCGgcaccgggGGUGuUGGUgccgCgGGGGACc -3'
miRNA:   3'- gCUCCCGCa-------CCGC-ACCGa---GgCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 149978 0.69 0.372332
Target:  5'- aCGGGGGCGcGGCGcccGCggacgCCGGGG-Cg -3'
miRNA:   3'- -GCUCCCGCaCCGCac-CGa----GGCCCCuG- -5'
5127 5' -64.3 NC_001798.1 + 148386 0.68 0.41858
Target:  5'- gGGcGGGCGUGGCGggcaggugugcgGGCggggugggcgCCGGGG-Cg -3'
miRNA:   3'- gCU-CCCGCACCGCa-----------CCGa---------GGCCCCuG- -5'
5127 5' -64.3 NC_001798.1 + 148277 0.66 0.570363
Target:  5'- -aGGGGCG-GGCGUGGCgggcaggugugcgggCGGGGu- -3'
miRNA:   3'- gcUCCCGCaCCGCACCGag-------------GCCCCug -5'
5127 5' -64.3 NC_001798.1 + 148050 0.74 0.17586
Target:  5'- gCGGGGGgGUGGUgguagugGUGGCggaaggaaacgggCCGGGGGCc -3'
miRNA:   3'- -GCUCCCgCACCG-------CACCGa------------GGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 146468 0.67 0.462881
Target:  5'- cCGAGcaGCGccGCG-GGCUCCGGGGcCg -3'
miRNA:   3'- -GCUCc-CGCacCGCaCCGAGGCCCCuG- -5'
5127 5' -64.3 NC_001798.1 + 146114 0.66 0.554237
Target:  5'- aGGGGGgGUGGUGgcGGCggCGGuGGAa -3'
miRNA:   3'- gCUCCCgCACCGCa-CCGagGCC-CCUg -5'
5127 5' -64.3 NC_001798.1 + 146042 0.67 0.494948
Target:  5'- gGGGGGCGUGGUGgugaacgauggggGGaacaCGGGGGg -3'
miRNA:   3'- gCUCCCGCACCGCa------------CCgag-GCCCCUg -5'
5127 5' -64.3 NC_001798.1 + 144561 0.67 0.488631
Target:  5'- gGGGGGCGUucgaaagGGCGaggacgGGCggCUGGGuGGCg -3'
miRNA:   3'- gCUCCCGCA-------CCGCa-----CCGa-GGCCC-CUG- -5'
5127 5' -64.3 NC_001798.1 + 138503 0.67 0.471682
Target:  5'- gGAGGGCGUGGCac-GCgacgaUCuCGGGGcACa -3'
miRNA:   3'- gCUCCCGCACCGcacCG-----AG-GCCCC-UG- -5'
5127 5' -64.3 NC_001798.1 + 136874 1.09 0.000579
Target:  5'- gCGAGGGCGUGGCGUGGCUCCGGGGACa -3'
miRNA:   3'- -GCUCCCGCACCGCACCGAGGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 135796 0.67 0.462881
Target:  5'- gGAGGcCGUGuGCGcGGC-CCGGGG-Cg -3'
miRNA:   3'- gCUCCcGCAC-CGCaCCGaGGCCCCuG- -5'
5127 5' -64.3 NC_001798.1 + 135471 0.68 0.445544
Target:  5'- uGGGGGCuGUucaaCGUGGaCcCCGGGGACg -3'
miRNA:   3'- gCUCCCG-CAcc--GCACC-GaGGCCCCUG- -5'
5127 5' -64.3 NC_001798.1 + 135248 0.69 0.371565
Target:  5'- cCGGGGGCG-GGCG-GGC-CUGGaaaggcuGGACg -3'
miRNA:   3'- -GCUCCCGCaCCGCaCCGaGGCC-------CCUG- -5'
5127 5' -64.3 NC_001798.1 + 129314 0.66 0.526129
Target:  5'- gGAGGGCGUGaCGUuccGC-CUGGaGGACg -3'
miRNA:   3'- gCUCCCGCACcGCAc--CGaGGCC-CCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.