Results 21 - 40 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5127 | 5' | -64.3 | NC_001798.1 | + | 85823 | 0.72 | 0.252076 |
Target: 5'- aCGGGGGgG-GGCGggGGCgggCGGGGGCu -3' miRNA: 3'- -GCUCCCgCaCCGCa-CCGag-GCCCCUG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 123922 | 0.72 | 0.269653 |
Target: 5'- -cGGGGCGUGcuGUGcccUGGgUCCGGGGGCc -3' miRNA: 3'- gcUCCCGCAC--CGC---ACCgAGGCCCCUG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 18220 | 0.72 | 0.24089 |
Target: 5'- cCGGGGGaCGgugGGCGggaagGGUggaugguuUCCGGGGGCc -3' miRNA: 3'- -GCUCCC-GCa--CCGCa----CCG--------AGGCCCCUG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 15495 | 0.72 | 0.24643 |
Target: 5'- uGGGGGC-UGGUGUGGUg--GGGGGCg -3' miRNA: 3'- gCUCCCGcACCGCACCGaggCCCCUG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 111594 | 0.71 | 0.278188 |
Target: 5'- gGGGGGCccGGCGgGGCggccuccuggagccCCGGGGGCg -3' miRNA: 3'- gCUCCCGcaCCGCaCCGa-------------GGCCCCUG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 31050 | 0.71 | 0.301121 |
Target: 5'- gCGGGGGuCG-GGCGggggucgGGCacuaaCCGGGGGCu -3' miRNA: 3'- -GCUCCC-GCaCCGCa------CCGa----GGCCCCUG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 27572 | 0.71 | 0.301121 |
Target: 5'- gCGGGGGaGcGGCc-GGCUCCGGGGGa -3' miRNA: 3'- -GCUCCCgCaCCGcaCCGAGGCCCCUg -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 59662 | 0.71 | 0.288205 |
Target: 5'- aGAGGGgG-GGCGacucGGCUCgcgUGGGGGCg -3' miRNA: 3'- gCUCCCgCaCCGCa---CCGAG---GCCCCUG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 108132 | 0.71 | 0.301121 |
Target: 5'- uGGGGGuCcUGGUG-GGCguugCCGGGGGCc -3' miRNA: 3'- gCUCCC-GcACCGCaCCGa---GGCCCCUG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 31260 | 0.71 | 0.307745 |
Target: 5'- gCGGGGGUG-GGaucUGGgUCUGGGGGCg -3' miRNA: 3'- -GCUCCCGCaCCgc-ACCgAGGCCCCUG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 12711 | 0.7 | 0.335348 |
Target: 5'- uGGGGGCGgcgggGGCGUGGUg-CGGcGcGACg -3' miRNA: 3'- gCUCCCGCa----CCGCACCGagGCC-C-CUG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 11658 | 0.7 | 0.349813 |
Target: 5'- cCGGGGGCG-GGgGUcGGgUCuCGGGGGg -3' miRNA: 3'- -GCUCCCGCaCCgCA-CCgAG-GCCCCUg -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 15327 | 0.7 | 0.349813 |
Target: 5'- cCGAGGGCcccGGCGcGGUagCgGGGGGCg -3' miRNA: 3'- -GCUCCCGca-CCGCaCCGa-GgCCCCUG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 16070 | 0.7 | 0.314479 |
Target: 5'- uGGGGGCGgcgGGCGU--CUgUGGGGGCa -3' miRNA: 3'- gCUCCCGCa--CCGCAccGAgGCCCCUG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 27388 | 0.69 | 0.372332 |
Target: 5'- gCGAGGGCGagcggUGGUGcgacUGGCgUCUucggGGGGGCg -3' miRNA: 3'- -GCUCCCGC-----ACCGC----ACCG-AGG----CCCCUG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 149978 | 0.69 | 0.372332 |
Target: 5'- aCGGGGGCGcGGCGcccGCggacgCCGGGG-Cg -3' miRNA: 3'- -GCUCCCGCaCCGCac-CGa----GGCCCCuG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 30932 | 0.69 | 0.372332 |
Target: 5'- uGAGGGCGgcgggggucgGGCGgggGGCgggCGGGGGu -3' miRNA: 3'- gCUCCCGCa---------CCGCa--CCGag-GCCCCUg -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 35592 | 0.69 | 0.395817 |
Target: 5'- uCGGcuGCGgccGCG-GGCUCCGGGGGCu -3' miRNA: 3'- -GCUccCGCac-CGCaCCGAGGCCCCUG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 135248 | 0.69 | 0.371565 |
Target: 5'- cCGGGGGCG-GGCG-GGC-CUGGaaaggcuGGACg -3' miRNA: 3'- -GCUCCCGCaCCGCaCCGaGGCC-------CCUG- -5' |
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5127 | 5' | -64.3 | NC_001798.1 | + | 2413 | 0.69 | 0.35721 |
Target: 5'- cCGAGGGCGccGGCGUguGGCUgggccCCGGcGGCu -3' miRNA: 3'- -GCUCCCGCa-CCGCA--CCGA-----GGCCcCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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