miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5130 3' -57.2 NC_001798.1 + 153235 0.7 0.678096
Target:  5'- -gGCCcgCgGCGGCgGAGGACCcGCGCGc -3'
miRNA:   3'- agUGGuaG-UGCUG-CUCCUGG-CGCGCa -5'
5130 3' -57.2 NC_001798.1 + 153014 0.66 0.88743
Target:  5'- gUCGCCGggGCGGaguccGGGcCCGCGCGg -3'
miRNA:   3'- -AGUGGUagUGCUgc---UCCuGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 150365 0.7 0.688049
Target:  5'- cCACCggCACGGCG-GG-CgGCGCGg -3'
miRNA:   3'- aGUGGuaGUGCUGCuCCuGgCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 148183 0.69 0.746525
Target:  5'- -gGCCGUguUGugGuGGGCCGUGUGg -3'
miRNA:   3'- agUGGUAguGCugCuCCUGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 144529 0.66 0.873561
Target:  5'- gCGCCGaccUCGCGuCGGGGAgacCCGC-CGUg -3'
miRNA:   3'- aGUGGU---AGUGCuGCUCCU---GGCGcGCA- -5'
5130 3' -57.2 NC_001798.1 + 142969 0.69 0.717604
Target:  5'- cCGcCCAUC----CGAGGACCGCGUGUa -3'
miRNA:   3'- aGU-GGUAGugcuGCUCCUGGCGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 141155 0.66 0.88743
Target:  5'- aCACCA--GCGACcgcucuccgGGGGAgCGUGCGUu -3'
miRNA:   3'- aGUGGUagUGCUG---------CUCCUgGCGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 140087 0.71 0.638003
Target:  5'- aUUAUCGUCAuCGACGAGG-CCGgGCu- -3'
miRNA:   3'- -AGUGGUAGU-GCUGCUCCuGGCgCGca -5'
5130 3' -57.2 NC_001798.1 + 135146 0.66 0.866312
Target:  5'- -gGCCGUCGgGcCGGucuGGACgGCGCGg -3'
miRNA:   3'- agUGGUAGUgCuGCU---CCUGgCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 134670 0.72 0.557065
Target:  5'- aCACCcgcagcggGUCACGGCGcGGGugcugcuGCCGCGCGg -3'
miRNA:   3'- aGUGG--------UAGUGCUGC-UCC-------UGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 134542 1.07 0.003446
Target:  5'- gUCACCAUCACGACGAGGACCGCGCGUu -3'
miRNA:   3'- -AGUGGUAGUGCUGCUCCUGGCGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 132690 0.66 0.894041
Target:  5'- aCGCCGaCGCGgcgcaggcGCGGGGGUCGCGCa- -3'
miRNA:   3'- aGUGGUaGUGC--------UGCUCCUGGCGCGca -5'
5130 3' -57.2 NC_001798.1 + 128855 0.69 0.755983
Target:  5'- -gGCCucCGCGuACGAGGACCugaugGCGCGg -3'
miRNA:   3'- agUGGuaGUGC-UGCUCCUGG-----CGCGCa -5'
5130 3' -57.2 NC_001798.1 + 128565 0.67 0.843365
Target:  5'- cCugCuguuUCGCuacuGCGuGGGCCGCGCGg -3'
miRNA:   3'- aGugGu---AGUGc---UGCuCCUGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 124498 0.68 0.774574
Target:  5'- cCGCCAUgGCGGgggGGGGGCUGCggGCGUg -3'
miRNA:   3'- aGUGGUAgUGCUg--CUCCUGGCG--CGCA- -5'
5130 3' -57.2 NC_001798.1 + 122824 0.66 0.88743
Target:  5'- -gGCCAggGCGGuCGGGGGCgGCgGCGg -3'
miRNA:   3'- agUGGUagUGCU-GCUCCUGgCG-CGCa -5'
5130 3' -57.2 NC_001798.1 + 122305 0.68 0.774574
Target:  5'- gCGCCAUCACuACG-GGACCaagcaGCGCu- -3'
miRNA:   3'- aGUGGUAGUGcUGCuCCUGG-----CGCGca -5'
5130 3' -57.2 NC_001798.1 + 122177 0.68 0.810214
Target:  5'- cUCACCcUCGUGcCGGGGACCGCcaagccGCGa -3'
miRNA:   3'- -AGUGGuAGUGCuGCUCCUGGCG------CGCa -5'
5130 3' -57.2 NC_001798.1 + 121678 0.69 0.746525
Target:  5'- gUCGCUAcgucgCGCGGCuGGGGGCCGCGg-- -3'
miRNA:   3'- -AGUGGUa----GUGCUG-CUCCUGGCGCgca -5'
5130 3' -57.2 NC_001798.1 + 121534 0.67 0.842571
Target:  5'- aCACgGUCGCGGCGcugcgccuggcguGGGGCC-CGUGg -3'
miRNA:   3'- aGUGgUAGUGCUGC-------------UCCUGGcGCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.