Results 21 - 40 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5130 | 3' | -57.2 | NC_001798.1 | + | 53647 | 0.66 | 0.894041 |
Target: 5'- aCGCCGcCGCGgugGCGGGG-UUGCGCGa -3' miRNA: 3'- aGUGGUaGUGC---UGCUCCuGGCGCGCa -5' |
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5130 | 3' | -57.2 | NC_001798.1 | + | 89134 | 0.66 | 0.893389 |
Target: 5'- cCGCCuccaggugCGCGACGGccucGGGCCGCagggagaGCGUa -3' miRNA: 3'- aGUGGua------GUGCUGCU----CCUGGCG-------CGCA- -5' |
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5130 | 3' | -57.2 | NC_001798.1 | + | 122824 | 0.66 | 0.88743 |
Target: 5'- -gGCCAggGCGGuCGGGGGCgGCgGCGg -3' miRNA: 3'- agUGGUagUGCU-GCUCCUGgCG-CGCa -5' |
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5130 | 3' | -57.2 | NC_001798.1 | + | 29427 | 0.66 | 0.88743 |
Target: 5'- cUC-CCAUCugcguCGGCGGGGGgCgGCGCa- -3' miRNA: 3'- -AGuGGUAGu----GCUGCUCCU-GgCGCGca -5' |
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5130 | 3' | -57.2 | NC_001798.1 | + | 153014 | 0.66 | 0.88743 |
Target: 5'- gUCGCCGggGCGGaguccGGGcCCGCGCGg -3' miRNA: 3'- -AGUGGUagUGCUgc---UCCuGGCGCGCa -5' |
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5130 | 3' | -57.2 | NC_001798.1 | + | 141155 | 0.66 | 0.88743 |
Target: 5'- aCACCA--GCGACcgcucuccgGGGGAgCGUGCGUu -3' miRNA: 3'- aGUGGUagUGCUG---------CUCCUgGCGCGCA- -5' |
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5130 | 3' | -57.2 | NC_001798.1 | + | 94553 | 0.66 | 0.880602 |
Target: 5'- gCGCCAaCGCGucCGAGGccGCCaagGCGCGg -3' miRNA: 3'- aGUGGUaGUGCu-GCUCC--UGG---CGCGCa -5' |
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5130 | 3' | -57.2 | NC_001798.1 | + | 97242 | 0.66 | 0.880602 |
Target: 5'- gCGCUGUUcggGCGGCGGGcggagcacuucGAUCGCGCGUu -3' miRNA: 3'- aGUGGUAG---UGCUGCUC-----------CUGGCGCGCA- -5' |
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5130 | 3' | -57.2 | NC_001798.1 | + | 104926 | 0.66 | 0.880602 |
Target: 5'- -aGCCGgccgCACGACugcagagacAGGACCaGCGCGg -3' miRNA: 3'- agUGGUa---GUGCUGc--------UCCUGG-CGCGCa -5' |
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5130 | 3' | -57.2 | NC_001798.1 | + | 58689 | 0.66 | 0.880602 |
Target: 5'- cCGCCGUCAgGGCcgcGGCgGCGCGg -3' miRNA: 3'- aGUGGUAGUgCUGcucCUGgCGCGCa -5' |
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5130 | 3' | -57.2 | NC_001798.1 | + | 104422 | 0.66 | 0.880602 |
Target: 5'- cCGCCGaagCACGGCcAGGGCCGUaaugguguugGCGg -3' miRNA: 3'- aGUGGUa--GUGCUGcUCCUGGCG----------CGCa -5' |
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5130 | 3' | -57.2 | NC_001798.1 | + | 60236 | 0.66 | 0.886757 |
Target: 5'- gCGCCcuccUCGCgggcggcaaagguGACGcAGGugCGCGCGUu -3' miRNA: 3'- aGUGGu---AGUG-------------CUGC-UCCugGCGCGCA- -5' |
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5130 | 3' | -57.2 | NC_001798.1 | + | 77724 | 0.67 | 0.835338 |
Target: 5'- cCGCCggcGUCgagGCGGCGcuGGACCGCGuCGa -3' miRNA: 3'- aGUGG---UAG---UGCUGCu-CCUGGCGC-GCa -5' |
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5130 | 3' | -57.2 | NC_001798.1 | + | 49112 | 0.67 | 0.835338 |
Target: 5'- -aACCGUCuccuCGACGAucuGGGCUucaGCGCGg -3' miRNA: 3'- agUGGUAGu---GCUGCU---CCUGG---CGCGCa -5' |
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5130 | 3' | -57.2 | NC_001798.1 | + | 121534 | 0.67 | 0.842571 |
Target: 5'- aCACgGUCGCGGCGcugcgccuggcguGGGGCC-CGUGg -3' miRNA: 3'- aGUGgUAGUGCUGC-------------UCCUGGcGCGCa -5' |
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5130 | 3' | -57.2 | NC_001798.1 | + | 97454 | 0.67 | 0.843365 |
Target: 5'- gCGCCGcgugcuggCGCGGCuGGGGGCCggcgGCGCGa -3' miRNA: 3'- aGUGGUa-------GUGCUG-CUCCUGG----CGCGCa -5' |
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5130 | 3' | -57.2 | NC_001798.1 | + | 128565 | 0.67 | 0.843365 |
Target: 5'- cCugCuguuUCGCuacuGCGuGGGCCGCGCGg -3' miRNA: 3'- aGugGu---AGUGc---UGCuCCUGGCGCGCa -5' |
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5130 | 3' | -57.2 | NC_001798.1 | + | 24572 | 0.67 | 0.843365 |
Target: 5'- -gGCCGgcgCGCGGaGGcGGGCCGCGUGg -3' miRNA: 3'- agUGGUa--GUGCUgCU-CCUGGCGCGCa -5' |
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5130 | 3' | -57.2 | NC_001798.1 | + | 92412 | 0.67 | 0.851208 |
Target: 5'- gUCGgguCCcgCACGACGggccuugggGGGACCGCG-GUg -3' miRNA: 3'- -AGU---GGuaGUGCUGC---------UCCUGGCGCgCA- -5' |
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5130 | 3' | -57.2 | NC_001798.1 | + | 52500 | 0.67 | 0.835338 |
Target: 5'- gCGCCGgcgCagggACGACGcGGcGGCCGCGCGc -3' miRNA: 3'- aGUGGUa--G----UGCUGC-UC-CUGGCGCGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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