miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5130 3' -57.2 NC_001798.1 + 24572 0.67 0.843365
Target:  5'- -gGCCGgcgCGCGGaGGcGGGCCGCGUGg -3'
miRNA:   3'- agUGGUa--GUGCUgCU-CCUGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 24817 0.71 0.607858
Target:  5'- gCGCCu--GCG-CGGGGACCuGCGCGUg -3'
miRNA:   3'- aGUGGuagUGCuGCUCCUGG-CGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 25143 0.68 0.792673
Target:  5'- cCGCCc-CGCGgccgccccucccGCGGGGGCCGCGCc- -3'
miRNA:   3'- aGUGGuaGUGC------------UGCUCCUGGCGCGca -5'
5130 3' -57.2 NC_001798.1 + 25527 0.68 0.765335
Target:  5'- gCGCCAggugCcCGACccgGAGGACgUGCGCGUg -3'
miRNA:   3'- aGUGGUa---GuGCUG---CUCCUG-GCGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 25572 0.66 0.866312
Target:  5'- cUCGCCGcUGCcgGGCGAGGACCuggcCGCGg -3'
miRNA:   3'- -AGUGGUaGUG--CUGCUCCUGGc---GCGCa -5'
5130 3' -57.2 NC_001798.1 + 26031 0.71 0.627949
Target:  5'- uUCGCg--CGCGugGAGG-CCGCGCa- -3'
miRNA:   3'- -AGUGguaGUGCugCUCCuGGCGCGca -5'
5130 3' -57.2 NC_001798.1 + 26344 0.71 0.607858
Target:  5'- aCGCCGUgCGCGGCGGcccggcGGAgCUGCGCGg -3'
miRNA:   3'- aGUGGUA-GUGCUGCU------CCU-GGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 26715 0.69 0.715651
Target:  5'- gCGCCuuuaagacagaCGCGGCGAuGGCCGCGCGc -3'
miRNA:   3'- aGUGGua---------GUGCUGCUcCUGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 28584 0.73 0.481179
Target:  5'- gCGCCAUCugGugGccuGGGagacgGCCGCGCGc -3'
miRNA:   3'- aGUGGUAGugCugC---UCC-----UGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 29427 0.66 0.88743
Target:  5'- cUC-CCAUCugcguCGGCGGGGGgCgGCGCa- -3'
miRNA:   3'- -AGuGGUAGu----GCUGCUCCU-GgCGCGca -5'
5130 3' -57.2 NC_001798.1 + 30727 0.66 0.880602
Target:  5'- gCACCAUCccgauagugaACGACccccGGACC-CGCGUg -3'
miRNA:   3'- aGUGGUAG----------UGCUGcu--CCUGGcGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 31332 0.67 0.818755
Target:  5'- cCugCggC-CGGCGGGGGgCGCGCGc -3'
miRNA:   3'- aGugGuaGuGCUGCUCCUgGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 33809 0.76 0.368698
Target:  5'- cUC-CCAUCGgGGCGAGGGggcUCGCGCGUu -3'
miRNA:   3'- -AGuGGUAGUgCUGCUCCU---GGCGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 36492 0.71 0.616894
Target:  5'- gCGCCggCGCGACGcgggcggccgggcGGGGgCGCGCGg -3'
miRNA:   3'- aGUGGuaGUGCUGC-------------UCCUgGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 37113 0.69 0.755983
Target:  5'- uUCACCggcuucuuccgGUgACGGCGAGGugUGUgaGCGUg -3'
miRNA:   3'- -AGUGG-----------UAgUGCUGCUCCugGCG--CGCA- -5'
5130 3' -57.2 NC_001798.1 + 39459 0.74 0.462749
Target:  5'- gCGCCAUCAgCGGaggGGGGGCCugGCGCGUg -3'
miRNA:   3'- aGUGGUAGU-GCUg--CUCCUGG--CGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 40272 0.67 0.818755
Target:  5'- aUACCcgCACGACcGGGGCCG-GCu- -3'
miRNA:   3'- aGUGGuaGUGCUGcUCCUGGCgCGca -5'
5130 3' -57.2 NC_001798.1 + 42749 0.7 0.65809
Target:  5'- gUCGCCcgCACaGACGGGcGgCGCGCGg -3'
miRNA:   3'- -AGUGGuaGUG-CUGCUCcUgGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 45181 0.68 0.801518
Target:  5'- cCACCAU--CGACG-GGGCCGuUGCGg -3'
miRNA:   3'- aGUGGUAguGCUGCuCCUGGC-GCGCa -5'
5130 3' -57.2 NC_001798.1 + 48261 0.69 0.759737
Target:  5'- cUCACCAccauUCGCGugacggucuGCGAGGGCaagaaccuccugcagCGCGCGa -3'
miRNA:   3'- -AGUGGU----AGUGC---------UGCUCCUG---------------GCGCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.