miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5130 3' -57.2 NC_001798.1 + 54361 0.7 0.657087
Target:  5'- gCGCC-UCGCGGCGuccggcccaccggGGGGCCGCgGCGc -3'
miRNA:   3'- aGUGGuAGUGCUGC-------------UCCUGGCG-CGCa -5'
5130 3' -57.2 NC_001798.1 + 42749 0.7 0.65809
Target:  5'- gUCGCCcgCACaGACGGGcGgCGCGCGg -3'
miRNA:   3'- -AGUGGuaGUG-CUGCUCcUgGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 60847 0.7 0.65809
Target:  5'- cCGCUcgCGCGGCGAcgGGAUCGCGUc- -3'
miRNA:   3'- aGUGGuaGUGCUGCU--CCUGGCGCGca -5'
5130 3' -57.2 NC_001798.1 + 51273 0.7 0.668107
Target:  5'- gCGCCAUCACG-CGGGccCCGCGgGg -3'
miRNA:   3'- aGUGGUAGUGCuGCUCcuGGCGCgCa -5'
5130 3' -57.2 NC_001798.1 + 86074 0.7 0.678096
Target:  5'- cCGCCGUCugGGaguCGGGGccccgGCUGCGCGc -3'
miRNA:   3'- aGUGGUAGugCU---GCUCC-----UGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 153235 0.7 0.678096
Target:  5'- -gGCCcgCgGCGGCgGAGGACCcGCGCGc -3'
miRNA:   3'- agUGGuaG-UGCUG-CUCCUGG-CGCGCa -5'
5130 3' -57.2 NC_001798.1 + 98527 0.7 0.678096
Target:  5'- cCGCCAUgCGCGGgGGGGGCUugauuuGCGCGc -3'
miRNA:   3'- aGUGGUA-GUGCUgCUCCUGG------CGCGCa -5'
5130 3' -57.2 NC_001798.1 + 90061 0.7 0.678096
Target:  5'- uUCGCUGUCaaacuccaggACGACGGGGGCCG-GCa- -3'
miRNA:   3'- -AGUGGUAG----------UGCUGCUCCUGGCgCGca -5'
5130 3' -57.2 NC_001798.1 + 74947 0.7 0.687055
Target:  5'- cCACCGUCcaGCGugGAGGAucugaccUCGgGCGa -3'
miRNA:   3'- aGUGGUAG--UGCugCUCCU-------GGCgCGCa -5'
5130 3' -57.2 NC_001798.1 + 110208 0.7 0.688049
Target:  5'- cUCACCGcCACcuGCGaAGGGCaCGCGCGg -3'
miRNA:   3'- -AGUGGUaGUGc-UGC-UCCUG-GCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 150365 0.7 0.688049
Target:  5'- cCACCggCACGGCG-GG-CgGCGCGg -3'
miRNA:   3'- aGUGGuaGUGCUGCuCCuGgCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 78539 0.7 0.692018
Target:  5'- cCACCgagcggGUCAUGGCGGGccugcgggaggcgcuGGCCGCGCGc -3'
miRNA:   3'- aGUGG------UAGUGCUGCUC---------------CUGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 51447 0.7 0.696968
Target:  5'- -gGCCuucCGCGACGGucgagauucucgcGGGCCGCGUGUc -3'
miRNA:   3'- agUGGua-GUGCUGCU-------------CCUGGCGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 99324 0.7 0.697957
Target:  5'- aCugCAUCGuCGAgGAGGuggaCGCGCGg -3'
miRNA:   3'- aGugGUAGU-GCUgCUCCug--GCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 111490 0.69 0.707811
Target:  5'- aC-CCAUgCACGGCGcGGACCuccucGCGCGUc -3'
miRNA:   3'- aGuGGUA-GUGCUGCuCCUGG-----CGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 85247 0.69 0.707811
Target:  5'- cCGCCccccCGCGGCcgcgcGGGGCCGCGCGc -3'
miRNA:   3'- aGUGGua--GUGCUGc----UCCUGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 4958 0.69 0.707811
Target:  5'- cCGCCAUCGCGACcucGGCCcCGCGg -3'
miRNA:   3'- aGUGGUAGUGCUGcucCUGGcGCGCa -5'
5130 3' -57.2 NC_001798.1 + 26715 0.69 0.715651
Target:  5'- gCGCCuuuaagacagaCGCGGCGAuGGCCGCGCGc -3'
miRNA:   3'- aGUGGua---------GUGCUGCUcCUGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 142969 0.69 0.717604
Target:  5'- cCGcCCAUC----CGAGGACCGCGUGUa -3'
miRNA:   3'- aGU-GGUAGugcuGCUCCUGGCGCGCA- -5'
5130 3' -57.2 NC_001798.1 + 22349 0.69 0.727326
Target:  5'- -gGgCGUCGgGGCG-GGGCCGCGCa- -3'
miRNA:   3'- agUgGUAGUgCUGCuCCUGGCGCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.