miRNA display CGI


Results 41 - 60 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5130 3' -57.2 NC_001798.1 + 52500 0.67 0.835338
Target:  5'- gCGCCGgcgCagggACGACGcGGcGGCCGCGCGc -3'
miRNA:   3'- aGUGGUa--G----UGCUGC-UC-CUGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 51130 0.67 0.835338
Target:  5'- gCGCCGUCGCcGgGAGGcCCGCG-GUc -3'
miRNA:   3'- aGUGGUAGUGcUgCUCCuGGCGCgCA- -5'
5130 3' -57.2 NC_001798.1 + 117083 0.67 0.835338
Target:  5'- aCGCCcgcgagagCGCGGCGGGGGagaaCGCGCu- -3'
miRNA:   3'- aGUGGua------GUGCUGCUCCUg---GCGCGca -5'
5130 3' -57.2 NC_001798.1 + 1532 0.67 0.835338
Target:  5'- gCGCCGggagCACGGCGcGGcgguACuCGCGCGg -3'
miRNA:   3'- aGUGGUa---GUGCUGCuCC----UG-GCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 16879 0.67 0.827132
Target:  5'- aCACCAaaGCc-CGAGGGCCGCGUc- -3'
miRNA:   3'- aGUGGUagUGcuGCUCCUGGCGCGca -5'
5130 3' -57.2 NC_001798.1 + 2300 0.67 0.827132
Target:  5'- -gGCCAgcgCGCGcgggucgaacAUGAGGGCCGgGCGc -3'
miRNA:   3'- agUGGUa--GUGC----------UGCUCCUGGCgCGCa -5'
5130 3' -57.2 NC_001798.1 + 4819 0.67 0.827132
Target:  5'- cCACCGUgcCACc-CGAacccGGGCCGCGCGg -3'
miRNA:   3'- aGUGGUA--GUGcuGCU----CCUGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 40272 0.67 0.818755
Target:  5'- aUACCcgCACGACcGGGGCCG-GCu- -3'
miRNA:   3'- aGUGGuaGUGCUGcUCCUGGCgCGca -5'
5130 3' -57.2 NC_001798.1 + 4209 0.67 0.818755
Target:  5'- gUCugCggCGCuGGCGGGGGCgCGgGCGg -3'
miRNA:   3'- -AGugGuaGUG-CUGCUCCUG-GCgCGCa -5'
5130 3' -57.2 NC_001798.1 + 118090 0.67 0.818755
Target:  5'- gCGCC--CGCGAUGGGGAggcccaCGCGCGa -3'
miRNA:   3'- aGUGGuaGUGCUGCUCCUg-----GCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 31332 0.67 0.818755
Target:  5'- cCugCggC-CGGCGGGGGgCGCGCGc -3'
miRNA:   3'- aGugGuaGuGCUGCUCCUgGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 65809 0.68 0.810214
Target:  5'- cCcCCGUUGCgGGCGAGGAUgGCGCu- -3'
miRNA:   3'- aGuGGUAGUG-CUGCUCCUGgCGCGca -5'
5130 3' -57.2 NC_001798.1 + 79502 0.68 0.810214
Target:  5'- gCGCCGcCGgGGCGAGGcguauCUGCGCGc -3'
miRNA:   3'- aGUGGUaGUgCUGCUCCu----GGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 122177 0.68 0.810214
Target:  5'- cUCACCcUCGUGcCGGGGACCGCcaagccGCGa -3'
miRNA:   3'- -AGUGGuAGUGCuGCUCCUGGCG------CGCa -5'
5130 3' -57.2 NC_001798.1 + 10684 0.68 0.809352
Target:  5'- gCGCCAccCACGACGggcgcagGGGACCGCagGCa- -3'
miRNA:   3'- aGUGGUa-GUGCUGC-------UCCUGGCG--CGca -5'
5130 3' -57.2 NC_001798.1 + 104824 0.68 0.801518
Target:  5'- gCGCgAUCGCGAUcggggGAGGACuCGUGgGUg -3'
miRNA:   3'- aGUGgUAGUGCUG-----CUCCUG-GCGCgCA- -5'
5130 3' -57.2 NC_001798.1 + 101749 0.68 0.801518
Target:  5'- -gGCCGUgucCACGuucACGuGGGCCGCGCu- -3'
miRNA:   3'- agUGGUA---GUGC---UGCuCCUGGCGCGca -5'
5130 3' -57.2 NC_001798.1 + 59045 0.68 0.801518
Target:  5'- aCGCCcccgaCAUGGCGuccgcauacGGGCCGCGCGa -3'
miRNA:   3'- aGUGGua---GUGCUGCu--------CCUGGCGCGCa -5'
5130 3' -57.2 NC_001798.1 + 45181 0.68 0.801518
Target:  5'- cCACCAU--CGACG-GGGCCGuUGCGg -3'
miRNA:   3'- aGUGGUAguGCUGCuCCUGGC-GCGCa -5'
5130 3' -57.2 NC_001798.1 + 5989 0.68 0.801518
Target:  5'- aCACCGgcugCGCGGCGgagaccGGGACgGCaGCGg -3'
miRNA:   3'- aGUGGUa---GUGCUGC------UCCUGgCG-CGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.