miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5130 5' -53.2 NC_001798.1 + 30675 0.66 0.972956
Target:  5'- ---aACACCccgguggcguACCUgauagugGGCGUgaCCGCCa -3'
miRNA:   3'- cuuaUGUGG----------UGGGa------CCGCAaaGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 134577 1.13 0.002884
Target:  5'- cGAAUACACCACCCUGGCGUUUCCGCCg -3'
miRNA:   3'- -CUUAUGUGGUGGGACCGCAAAGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 53268 0.66 0.967013
Target:  5'- ---cGCGCCGacgaCCUgcagccGGCGUUUCUGaCCg -3'
miRNA:   3'- cuuaUGUGGUg---GGA------CCGCAAAGGC-GG- -5'
5130 5' -53.2 NC_001798.1 + 132061 0.66 0.967013
Target:  5'- gGAGUACGCCauGCCCggauuuucGGCGcg-CCGUUg -3'
miRNA:   3'- -CUUAUGUGG--UGGGa-------CCGCaaaGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 48152 0.66 0.97009
Target:  5'- --cUGCGCCGCggucgggcgCCUGGCGgccacgCaCGCCc -3'
miRNA:   3'- cuuAUGUGGUG---------GGACCGCaaa---G-GCGG- -5'
5130 5' -53.2 NC_001798.1 + 28962 0.66 0.97009
Target:  5'- ---gGCGCCGCCCc-GCcgcUCCGCCc -3'
miRNA:   3'- cuuaUGUGGUGGGacCGcaaAGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 86339 0.66 0.97009
Target:  5'- -cAUGCGaCGCCUgagGGCGUccgucgUCCGCUa -3'
miRNA:   3'- cuUAUGUgGUGGGa--CCGCAa-----AGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 108679 0.66 0.97009
Target:  5'- ---cGCGCCGCCCccGG-Gg--CCGCCc -3'
miRNA:   3'- cuuaUGUGGUGGGa-CCgCaaaGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 87265 0.66 0.972118
Target:  5'- ---aGCACCGcaccuuucuggccuCCCUGGuCGUgcuggccgaCCGCCa -3'
miRNA:   3'- cuuaUGUGGU--------------GGGACC-GCAaa-------GGCGG- -5'
5130 5' -53.2 NC_001798.1 + 16648 0.66 0.972956
Target:  5'- -----uGCCGCCC-GGCG--UCCGCg -3'
miRNA:   3'- cuuaugUGGUGGGaCCGCaaAGGCGg -5'
5130 5' -53.2 NC_001798.1 + 25089 0.66 0.972956
Target:  5'- ---gGCGCCGCCg-GGCGgcgccCCGCg -3'
miRNA:   3'- cuuaUGUGGUGGgaCCGCaaa--GGCGg -5'
5130 5' -53.2 NC_001798.1 + 86713 0.66 0.975618
Target:  5'- cGAAgccCACCGCgCUGGCcacauuugUCCGCg -3'
miRNA:   3'- -CUUau-GUGGUGgGACCGcaa-----AGGCGg -5'
5130 5' -53.2 NC_001798.1 + 37400 0.66 0.972956
Target:  5'- -----aGCCACCg-GGCGggUCCGUg -3'
miRNA:   3'- cuuaugUGGUGGgaCCGCaaAGGCGg -5'
5130 5' -53.2 NC_001798.1 + 79500 0.66 0.972956
Target:  5'- --cUGCGCCGCCggggcgaGGCGUaUCUGCg -3'
miRNA:   3'- cuuAUGUGGUGGga-----CCGCAaAGGCGg -5'
5130 5' -53.2 NC_001798.1 + 139001 0.66 0.972956
Target:  5'- -----gGCCACCCcGGCGauaUCGCCc -3'
miRNA:   3'- cuuaugUGGUGGGaCCGCaaaGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 19099 0.66 0.975361
Target:  5'- cGAGUACGCacaaaaaACCCggcUGGgGUUUCgcuucauCGCCa -3'
miRNA:   3'- -CUUAUGUGg------UGGG---ACCgCAAAG-------GCGG- -5'
5130 5' -53.2 NC_001798.1 + 10683 0.66 0.975618
Target:  5'- ---aGCGCCACCCacgacgGGCGcaggggaCCGCa -3'
miRNA:   3'- cuuaUGUGGUGGGa-----CCGCaaa----GGCGg -5'
5130 5' -53.2 NC_001798.1 + 47684 0.66 0.975618
Target:  5'- cGAUGCGCgcgCGCCCgaggGGCGaggUUCGCUu -3'
miRNA:   3'- cUUAUGUG---GUGGGa---CCGCaa-AGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 88931 0.66 0.975618
Target:  5'- cGAGUugcACACCACCUugaUGGCGgc-CUGUUg -3'
miRNA:   3'- -CUUA---UGUGGUGGG---ACCGCaaaGGCGG- -5'
5130 5' -53.2 NC_001798.1 + 103144 0.66 0.975618
Target:  5'- ---gGCGCCGCCCgaUGGCGcacaggGCCa -3'
miRNA:   3'- cuuaUGUGGUGGG--ACCGCaaagg-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.