miRNA display CGI


Results 61 - 80 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5131 5' -63.5 NC_001798.1 + 3456 0.68 0.469918
Target:  5'- gGCUGgucagcaggaaGCCCU-UCUGCGCGCgGUCGUa -3'
miRNA:   3'- gCGAC-----------CGGGAcAGGCGCGCG-CAGCGg -5'
5131 5' -63.5 NC_001798.1 + 79137 0.68 0.469918
Target:  5'- gCGgaGGCCguggaggagCUGggCGCGCGCGUCaCCa -3'
miRNA:   3'- -GCgaCCGG---------GACagGCGCGCGCAGcGG- -5'
5131 5' -63.5 NC_001798.1 + 134895 0.68 0.469918
Target:  5'- gGCUGGCCCacGUuuaCCGUGC-CGgcCGCCg -3'
miRNA:   3'- gCGACCGGGa-CA---GGCGCGcGCa-GCGG- -5'
5131 5' -63.5 NC_001798.1 + 3334 0.68 0.469918
Target:  5'- gGCgGGCUUc--CCGCGgGCGUCGUCg -3'
miRNA:   3'- gCGaCCGGGacaGGCGCgCGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 122088 0.68 0.469918
Target:  5'- uGCUGGCgggCCUGgagCCGCccggcgggggGCGCuUUGCCa -3'
miRNA:   3'- gCGACCG---GGACa--GGCG----------CGCGcAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 1358 0.68 0.469918
Target:  5'- cCGCcGGgCCg--CCGCGCacgGCGUCGCg -3'
miRNA:   3'- -GCGaCCgGGacaGGCGCG---CGCAGCGg -5'
5131 5' -63.5 NC_001798.1 + 154474 0.68 0.478792
Target:  5'- aGCcGGCCgCUcccCCGCGgGCGcCGCCc -3'
miRNA:   3'- gCGaCCGG-GAca-GGCGCgCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 124424 0.68 0.478792
Target:  5'- aGCUGcCCCgcgGUCgCGCGgGCcGUgGCCa -3'
miRNA:   3'- gCGACcGGGa--CAG-GCGCgCG-CAgCGG- -5'
5131 5' -63.5 NC_001798.1 + 136 0.68 0.478792
Target:  5'- aGCcGGCCgCUcccCCGCGgGCGcCGCCc -3'
miRNA:   3'- gCGaCCGG-GAca-GGCGCgCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 95107 0.68 0.487747
Target:  5'- uGCUgcGGCCCgUGauggCCGCGCGCccgaugGUCGUg -3'
miRNA:   3'- gCGA--CCGGG-ACa---GGCGCGCG------CAGCGg -5'
5131 5' -63.5 NC_001798.1 + 123234 0.68 0.487747
Target:  5'- gGCUacgggacccGGCCUUGUCCGCuGaCGCGU-GCUu -3'
miRNA:   3'- gCGA---------CCGGGACAGGCG-C-GCGCAgCGG- -5'
5131 5' -63.5 NC_001798.1 + 153904 0.68 0.496781
Target:  5'- uGCcGGCgUaGUCCGCGU-CGUCGCUg -3'
miRNA:   3'- gCGaCCGgGaCAGGCGCGcGCAGCGG- -5'
5131 5' -63.5 NC_001798.1 + 121963 0.68 0.496781
Target:  5'- cCGCca-CCCgGUCCGCGCGCGcC-CCa -3'
miRNA:   3'- -GCGaccGGGaCAGGCGCGCGCaGcGG- -5'
5131 5' -63.5 NC_001798.1 + 2990 0.68 0.505889
Target:  5'- gGCcGGCCCgcgGgccCCGgGCGCGggggCGCg -3'
miRNA:   3'- gCGaCCGGGa--Ca--GGCgCGCGCa---GCGg -5'
5131 5' -63.5 NC_001798.1 + 93759 0.68 0.505889
Target:  5'- uGCgGGCCCgccaccccaaGUUCGCGaGCGcCGCCc -3'
miRNA:   3'- gCGaCCGGGa---------CAGGCGCgCGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 28212 0.67 0.515068
Target:  5'- cCGgaGGCCCcGcacgCCGCGCcUGcCGCCg -3'
miRNA:   3'- -GCgaCCGGGaCa---GGCGCGcGCaGCGG- -5'
5131 5' -63.5 NC_001798.1 + 25961 0.67 0.515068
Target:  5'- gCGCUGGCCg-G-CgGCGCGgGaccugCGCCg -3'
miRNA:   3'- -GCGACCGGgaCaGgCGCGCgCa----GCGG- -5'
5131 5' -63.5 NC_001798.1 + 24858 0.67 0.515068
Target:  5'- cCGCcgUGGCCg---CCGUGCGCGccgugagccuggUCGCCg -3'
miRNA:   3'- -GCG--ACCGGgacaGGCGCGCGC------------AGCGG- -5'
5131 5' -63.5 NC_001798.1 + 117654 0.67 0.515068
Target:  5'- uCGCcGGCCCUGcaacCCGCGgggaCGCG-CgGCCg -3'
miRNA:   3'- -GCGaCCGGGACa---GGCGC----GCGCaG-CGG- -5'
5131 5' -63.5 NC_001798.1 + 24933 0.67 0.515068
Target:  5'- uGCUGaGCUCcG-CCGC-CGCGcCGCCg -3'
miRNA:   3'- gCGAC-CGGGaCaGGCGcGCGCaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.