miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5133 3' -60 NC_001798.1 + 154537 0.68 0.652873
Target:  5'- -gGCGCCCCCGCGCGgCUuuuuucccgCGcCCGc- -3'
miRNA:   3'- gaUGUGGGGGCGCGUgGA---------GCuGGCac -5'
5133 3' -60 NC_001798.1 + 154505 0.66 0.767957
Target:  5'- ----cCCCCCGCGCGCCgcggGGCUGc- -3'
miRNA:   3'- gauguGGGGGCGCGUGGag--CUGGCac -5'
5133 3' -60 NC_001798.1 + 154436 0.67 0.72116
Target:  5'- -gGCAgCCCCGCGCGCCcccuUCc-CCGUc -3'
miRNA:   3'- gaUGUgGGGGCGCGUGG----AGcuGGCAc -5'
5133 3' -60 NC_001798.1 + 153972 0.67 0.682387
Target:  5'- -gACGCggCCgGCGCGCuCUCGACCGc- -3'
miRNA:   3'- gaUGUGg-GGgCGCGUG-GAGCUGGCac -5'
5133 3' -60 NC_001798.1 + 153427 0.66 0.777011
Target:  5'- -aGgACCCCCGuCGgGCCaggcgcgCGGCCGUc -3'
miRNA:   3'- gaUgUGGGGGC-GCgUGGa------GCUGGCAc -5'
5133 3' -60 NC_001798.1 + 150699 0.69 0.564257
Target:  5'- -cGCGCCUgCGCGCGCCccccgcCGGCCGc- -3'
miRNA:   3'- gaUGUGGGgGCGCGUGGa-----GCUGGCac -5'
5133 3' -60 NC_001798.1 + 149154 0.78 0.181153
Target:  5'- ---uGCCCCCGagGCGCCUCGGCCGgUGg -3'
miRNA:   3'- gaugUGGGGGCg-CGUGGAGCUGGC-AC- -5'
5133 3' -60 NC_001798.1 + 147048 0.71 0.487353
Target:  5'- gUGCGCCCCgGCcggaggggcccccGCACCUCGGCgGc- -3'
miRNA:   3'- gAUGUGGGGgCG-------------CGUGGAGCUGgCac -5'
5133 3' -60 NC_001798.1 + 146893 0.67 0.692159
Target:  5'- -gGCugCUCCGCGCACCggcgCGcCCu-- -3'
miRNA:   3'- gaUGugGGGGCGCGUGGa---GCuGGcac -5'
5133 3' -60 NC_001798.1 + 146632 0.71 0.488274
Target:  5'- uUAgGCCCCCGCGgGCauccggCGGCCGg- -3'
miRNA:   3'- gAUgUGGGGGCGCgUGga----GCUGGCac -5'
5133 3' -60 NC_001798.1 + 145494 0.68 0.623219
Target:  5'- -cGCGCCCCCgcccggccgccGCGCGCCcccgccCGGCCGc- -3'
miRNA:   3'- gaUGUGGGGG-----------CGCGUGGa-----GCUGGCac -5'
5133 3' -60 NC_001798.1 + 145452 0.68 0.623219
Target:  5'- -cGCGCCCCCgcccggccgccGCGCGCCcccgccCGGCCGc- -3'
miRNA:   3'- gaUGUGGGGG-----------CGCGUGGa-----GCUGGCac -5'
5133 3' -60 NC_001798.1 + 145410 0.68 0.623219
Target:  5'- -cGCGCCCCCgcccggccgccGCGCGCCcccgccCGGCCGc- -3'
miRNA:   3'- gaUGUGGGGG-----------CGCGUGGa-----GCUGGCac -5'
5133 3' -60 NC_001798.1 + 144058 0.68 0.623219
Target:  5'- -aACGCCaggCCGUGCGCCU-GGCCGg- -3'
miRNA:   3'- gaUGUGGg--GGCGCGUGGAgCUGGCac -5'
5133 3' -60 NC_001798.1 + 141302 0.67 0.692159
Target:  5'- aCUACGCCCUCGaagaGCcugagaccACCgCGGCCGUc -3'
miRNA:   3'- -GAUGUGGGGGCg---CG--------UGGaGCUGGCAc -5'
5133 3' -60 NC_001798.1 + 140174 0.69 0.574008
Target:  5'- -cACACCCCCcaguacGCGgGCCgccugCGGCCGg- -3'
miRNA:   3'- gaUGUGGGGG------CGCgUGGa----GCUGGCac -5'
5133 3' -60 NC_001798.1 + 139335 0.73 0.353241
Target:  5'- -gGCGCCCgCGCGCGCUgugCGGCCaUGg -3'
miRNA:   3'- gaUGUGGGgGCGCGUGGa--GCUGGcAC- -5'
5133 3' -60 NC_001798.1 + 138737 0.7 0.506864
Target:  5'- -gGCGCgCUCCGCgGCcCCggCGACCGUGg -3'
miRNA:   3'- gaUGUG-GGGGCG-CGuGGa-GCUGGCAC- -5'
5133 3' -60 NC_001798.1 + 138599 0.67 0.730695
Target:  5'- -gGCACUCgCCGCGCugCccgcUGACCGg- -3'
miRNA:   3'- gaUGUGGG-GGCGCGugGa---GCUGGCac -5'
5133 3' -60 NC_001798.1 + 138439 0.69 0.583798
Target:  5'- uUGCGCCCCaacaGCACCUUGACgGa- -3'
miRNA:   3'- gAUGUGGGGgcg-CGUGGAGCUGgCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.