miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5133 5' -55.4 NC_001798.1 + 153677 0.69 0.799622
Target:  5'- cCGCGggcGGGGaCGCGGGGGCc---- -3'
miRNA:   3'- -GCGUauuCUCCaGCGCCCCCGcauuu -5'
5133 5' -55.4 NC_001798.1 + 153612 0.7 0.712906
Target:  5'- gGCGUcAGGGGGUCG-GaGGGGCGUc-- -3'
miRNA:   3'- gCGUA-UUCUCCAGCgC-CCCCGCAuuu -5'
5133 5' -55.4 NC_001798.1 + 153574 0.7 0.712906
Target:  5'- gGCGUcAGGGGGUCG-GaGGGGCGUc-- -3'
miRNA:   3'- gCGUA-UUCUCCAGCgC-CCCCGCAuuu -5'
5133 5' -55.4 NC_001798.1 + 153536 0.7 0.712906
Target:  5'- gGCGUcAGGGGGUCG-GaGGGGCGUc-- -3'
miRNA:   3'- gCGUA-UUCUCCAGCgC-CCCCGCAuuu -5'
5133 5' -55.4 NC_001798.1 + 153003 0.68 0.834542
Target:  5'- gGCGcGGGGcGGUCGCcGGGGCGg--- -3'
miRNA:   3'- gCGUaUUCU-CCAGCGcCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 151819 0.66 0.906538
Target:  5'- aGCAacGGGGGggauuuagaggGCGcGGGGCGUGAGg -3'
miRNA:   3'- gCGUauUCUCCag---------CGC-CCCCGCAUUU- -5'
5133 5' -55.4 NC_001798.1 + 151605 0.66 0.894933
Target:  5'- gCGCucggccGGGGGcCGggcCGGGGGCGUGGc -3'
miRNA:   3'- -GCGuau---UCUCCaGC---GCCCCCGCAUUu -5'
5133 5' -55.4 NC_001798.1 + 150850 0.66 0.913843
Target:  5'- gCGCcgGucGGGUCGCGGcGGGCu---- -3'
miRNA:   3'- -GCGuaUucUCCAGCGCC-CCCGcauuu -5'
5133 5' -55.4 NC_001798.1 + 150451 0.66 0.919664
Target:  5'- aCGCGcGGGGcgacGGccgCGCGGGGGCGc--- -3'
miRNA:   3'- -GCGUaUUCU----CCa--GCGCCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 150195 0.7 0.752562
Target:  5'- gGCGUGGGGGG-CGgcacCGGGGGUGUu-- -3'
miRNA:   3'- gCGUAUUCUCCaGC----GCCCCCGCAuuu -5'
5133 5' -55.4 NC_001798.1 + 149650 0.67 0.881147
Target:  5'- gCGCGUGAGgccgggcgccGGGUCGCGGgccccGGGCu---- -3'
miRNA:   3'- -GCGUAUUC----------UCCAGCGCC-----CCCGcauuu -5'
5133 5' -55.4 NC_001798.1 + 148036 0.68 0.850905
Target:  5'- cCGCGUGGGcgcGGG-CGgGGGGGUGg--- -3'
miRNA:   3'- -GCGUAUUC---UCCaGCgCCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 147613 0.7 0.742787
Target:  5'- gGCGggGAGAGGggGgGGGGGCGg--- -3'
miRNA:   3'- gCGUa-UUCUCCagCgCCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 146278 0.66 0.907779
Target:  5'- cCGCAgccgGAGAGGccgaGCGGGGaGUGg--- -3'
miRNA:   3'- -GCGUa---UUCUCCag--CGCCCC-CGCauuu -5'
5133 5' -55.4 NC_001798.1 + 131203 1.06 0.004609
Target:  5'- uCGCAUAAGAGGUCGCGGGGGCGUAAAg -3'
miRNA:   3'- -GCGUAUUCUCCAGCGCCCCCGCAUUU- -5'
5133 5' -55.4 NC_001798.1 + 125693 0.67 0.873913
Target:  5'- gGCGaAGGAguccgacgucGGgcgcgCGCGGGGGCGgcGAg -3'
miRNA:   3'- gCGUaUUCU----------CCa----GCGCCCCCGCauUU- -5'
5133 5' -55.4 NC_001798.1 + 113740 0.69 0.771778
Target:  5'- uCGCGUucuaacGGGGGuGUgGCGGGGGgGUAu- -3'
miRNA:   3'- -GCGUA------UUCUC-CAgCGCCCCCgCAUuu -5'
5133 5' -55.4 NC_001798.1 + 111640 0.69 0.799622
Target:  5'- uCGCGUcGGGGGcgcucggCGgGGGGGCGg--- -3'
miRNA:   3'- -GCGUAuUCUCCa------GCgCCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 98534 0.7 0.756443
Target:  5'- gCGCGgggGGGGcuugauuugcgcgcuGGUCGUGGGGGCGc--- -3'
miRNA:   3'- -GCGUa--UUCU---------------CCAGCGCCCCCGCauuu -5'
5133 5' -55.4 NC_001798.1 + 97525 0.69 0.762229
Target:  5'- cCGCGgagGAGGGGggGCGGaGGCGUGGc -3'
miRNA:   3'- -GCGUa--UUCUCCagCGCCcCCGCAUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.