miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5134 5' -55.7 NC_001798.1 + 103041 0.66 0.938285
Target:  5'- uCGgcGgccuCGCGucGCACCCCCUCGcgcgucGCCg -3'
miRNA:   3'- -GCauCacu-GUGU--CGUGGGGGAGC------UGG- -5'
5134 5' -55.7 NC_001798.1 + 99992 0.66 0.923008
Target:  5'- cCGUGGa-GCGCAucaagacCACCUCCUCGAUCg -3'
miRNA:   3'- -GCAUCacUGUGUc------GUGGGGGAGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 10667 0.66 0.923008
Target:  5'- cCGUcGGgggGGcCACAGCGCCaCCCaCGACg -3'
miRNA:   3'- -GCA-UCa--CU-GUGUCGUGG-GGGaGCUGg -5'
5134 5' -55.7 NC_001798.1 + 143226 0.66 0.923008
Target:  5'- uCGUAuccGUGAgcugGCGGCGCCCCaguucgUCGAUCg -3'
miRNA:   3'- -GCAU---CACUg---UGUCGUGGGGg-----AGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 138581 0.66 0.917446
Target:  5'- --gGGgggGGCACAGCACCaggcaCUCG-CCg -3'
miRNA:   3'- gcaUCa--CUGUGUCGUGGgg---GAGCuGG- -5'
5134 5' -55.7 NC_001798.1 + 122363 0.66 0.917446
Target:  5'- gCGUGGggcgggcGACGCGccCGCCCCCcgCGGCUg -3'
miRNA:   3'- -GCAUCa------CUGUGUc-GUGGGGGa-GCUGG- -5'
5134 5' -55.7 NC_001798.1 + 71134 0.66 0.917446
Target:  5'- gCGUGcGgacgGACGCGGC-CgUCUUCGACCc -3'
miRNA:   3'- -GCAU-Ca---CUGUGUCGuGgGGGAGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 124084 0.66 0.91165
Target:  5'- --aGGcGGCGCcuGCGCCCCgaCGGCCc -3'
miRNA:   3'- gcaUCaCUGUGu-CGUGGGGgaGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 137356 0.66 0.909865
Target:  5'- gCGUuc-GACGCcccagcccugguccGGCGCaCCCCUCGGCg -3'
miRNA:   3'- -GCAucaCUGUG--------------UCGUG-GGGGAGCUGg -5'
5134 5' -55.7 NC_001798.1 + 142342 0.66 0.927288
Target:  5'- gGUGG-GACGCccauauguacgcGUACCCCUUUGACUc -3'
miRNA:   3'- gCAUCaCUGUGu-----------CGUGGGGGAGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 120578 0.66 0.928335
Target:  5'- gGUGGUGGaggggcggUACAGCAgaaaccgcuCCCCCgcCGACUu -3'
miRNA:   3'- gCAUCACU--------GUGUCGU---------GGGGGa-GCUGG- -5'
5134 5' -55.7 NC_001798.1 + 73720 0.66 0.928335
Target:  5'- uCGUGGcgGGCGCGGCACacaugaUUC-CGGCCg -3'
miRNA:   3'- -GCAUCa-CUGUGUCGUGg-----GGGaGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 52247 0.66 0.938285
Target:  5'- uCGUGGgGGCGCGccuGCACCCgCaCUCcGCCc -3'
miRNA:   3'- -GCAUCaCUGUGU---CGUGGG-G-GAGcUGG- -5'
5134 5' -55.7 NC_001798.1 + 32768 0.66 0.933427
Target:  5'- cCGUGGUcucgggaGCAgGGCGCgCCCgcgcCGGCCg -3'
miRNA:   3'- -GCAUCAc------UGUgUCGUGgGGGa---GCUGG- -5'
5134 5' -55.7 NC_001798.1 + 135091 0.66 0.933427
Target:  5'- --cGGUcGCGCgguGGCACCCCa-CGGCCa -3'
miRNA:   3'- gcaUCAcUGUG---UCGUGGGGgaGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 109562 0.66 0.933427
Target:  5'- ----aUGGCGCGGUGgCCCCgagcgCGGCCc -3'
miRNA:   3'- gcaucACUGUGUCGUgGGGGa----GCUGG- -5'
5134 5' -55.7 NC_001798.1 + 44207 0.66 0.933427
Target:  5'- gCGUGGUGAgGCcgcGCugCCCCaggGACa -3'
miRNA:   3'- -GCAUCACUgUGu--CGugGGGGag-CUGg -5'
5134 5' -55.7 NC_001798.1 + 108255 0.66 0.933427
Target:  5'- uGUGGUuGCcCAaCACCCCCgacgccagCGACCc -3'
miRNA:   3'- gCAUCAcUGuGUcGUGGGGGa-------GCUGG- -5'
5134 5' -55.7 NC_001798.1 + 106948 0.66 0.933427
Target:  5'- ------cACGCAGCACCgUCUgGACCg -3'
miRNA:   3'- gcaucacUGUGUCGUGGgGGAgCUGG- -5'
5134 5' -55.7 NC_001798.1 + 115714 0.66 0.932929
Target:  5'- gCGUGGccGACgucgagcuucccgGCGGCGaaguCCCCC-CGGCCg -3'
miRNA:   3'- -GCAUCa-CUG-------------UGUCGU----GGGGGaGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.