miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5134 5' -55.7 NC_001798.1 + 2422 0.67 0.899362
Target:  5'- cCGgcGUGugGCuGgGCCCCggCGGCUg -3'
miRNA:   3'- -GCauCACugUGuCgUGGGGgaGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 3263 0.69 0.8078
Target:  5'- cCGUAGccggcgGGCACcGCGCgCUCgUCGGCCg -3'
miRNA:   3'- -GCAUCa-----CUGUGuCGUG-GGGgAGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 9135 0.69 0.798981
Target:  5'- gGUGGUcugcggcacgcgGGCGCGGCGCCgCCCgCG-CCg -3'
miRNA:   3'- gCAUCA------------CUGUGUCGUGG-GGGaGCuGG- -5'
5134 5' -55.7 NC_001798.1 + 10667 0.66 0.923008
Target:  5'- cCGUcGGgggGGcCACAGCGCCaCCCaCGACg -3'
miRNA:   3'- -GCA-UCa--CU-GUGUCGUGG-GGGaGCUGg -5'
5134 5' -55.7 NC_001798.1 + 14265 0.67 0.905621
Target:  5'- -----aGACACAGCcCCCCCaCGAUg -3'
miRNA:   3'- gcaucaCUGUGUCGuGGGGGaGCUGg -5'
5134 5' -55.7 NC_001798.1 + 16087 0.68 0.849392
Target:  5'- uGUGGgGGCagACAGCGCUCCCggaaacgcaGGCCa -3'
miRNA:   3'- gCAUCaCUG--UGUCGUGGGGGag-------CUGG- -5'
5134 5' -55.7 NC_001798.1 + 28271 0.68 0.872083
Target:  5'- gCGcGG-GcCGCAGCGCCCCCUuCcGCCc -3'
miRNA:   3'- -GCaUCaCuGUGUCGUGGGGGA-GcUGG- -5'
5134 5' -55.7 NC_001798.1 + 30419 0.69 0.824961
Target:  5'- -----gGACGCGGCcacGCCCCCggccCGGCCc -3'
miRNA:   3'- gcaucaCUGUGUCG---UGGGGGa---GCUGG- -5'
5134 5' -55.7 NC_001798.1 + 31203 0.67 0.899362
Target:  5'- -----cGAC-CGGCGCCCCCUgGcGCCc -3'
miRNA:   3'- gcaucaCUGuGUCGUGGGGGAgC-UGG- -5'
5134 5' -55.7 NC_001798.1 + 31566 0.73 0.58295
Target:  5'- uCGUcGG-GGCGCGccgcGCGCCCCCgcgCGGCCg -3'
miRNA:   3'- -GCA-UCaCUGUGU----CGUGGGGGa--GCUGG- -5'
5134 5' -55.7 NC_001798.1 + 32057 0.7 0.762306
Target:  5'- cCGgcGUccgcgGGCGCcGCGCCCCCgUCGGCg -3'
miRNA:   3'- -GCauCA-----CUGUGuCGUGGGGG-AGCUGg -5'
5134 5' -55.7 NC_001798.1 + 32768 0.66 0.933427
Target:  5'- cCGUGGUcucgggaGCAgGGCGCgCCCgcgcCGGCCg -3'
miRNA:   3'- -GCAUCAc------UGUgUCGUGgGGGa---GCUGG- -5'
5134 5' -55.7 NC_001798.1 + 40698 0.69 0.798981
Target:  5'- uCGUAGcGAagcgcCACgAGCACCaCCC-CGGCCa -3'
miRNA:   3'- -GCAUCaCU-----GUG-UCGUGG-GGGaGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 44029 0.7 0.733579
Target:  5'- uCGUAcGUGGCucCGGCGCCCCCcaagCGcggaGCCu -3'
miRNA:   3'- -GCAU-CACUGu-GUCGUGGGGGa---GC----UGG- -5'
5134 5' -55.7 NC_001798.1 + 44207 0.66 0.933427
Target:  5'- gCGUGGUGAgGCcgcGCugCCCCaggGACa -3'
miRNA:   3'- -GCAUCACUgUGu--CGugGGGGag-CUGg -5'
5134 5' -55.7 NC_001798.1 + 47870 0.67 0.892875
Target:  5'- cCGUGGgcgccggcgGGCGCucGCACgCCCCUCcccgcgGACCc -3'
miRNA:   3'- -GCAUCa--------CUGUGu-CGUG-GGGGAG------CUGG- -5'
5134 5' -55.7 NC_001798.1 + 48778 0.7 0.743253
Target:  5'- uCGgGGacGCACGGCACCCCCggCGAUUc -3'
miRNA:   3'- -GCaUCacUGUGUCGUGGGGGa-GCUGG- -5'
5134 5' -55.7 NC_001798.1 + 51173 0.67 0.905621
Target:  5'- gCGUccgAGgcccgGGCgGCGGCGCCCCCcCG-CCg -3'
miRNA:   3'- -GCA---UCa----CUG-UGUCGUGGGGGaGCuGG- -5'
5134 5' -55.7 NC_001798.1 + 51491 0.67 0.879232
Target:  5'- cCGgAGcUGcAgGCGGCAuuCCCCCUgGACCg -3'
miRNA:   3'- -GCaUC-AC-UgUGUCGU--GGGGGAgCUGG- -5'
5134 5' -55.7 NC_001798.1 + 52247 0.66 0.938285
Target:  5'- uCGUGGgGGCGCGccuGCACCCgCaCUCcGCCc -3'
miRNA:   3'- -GCAUCaCUGUGU---CGUGGG-G-GAGcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.