miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5134 5' -55.7 NC_001798.1 + 53044 0.67 0.892875
Target:  5'- --cGG-GACGCGGCAUaCCUC-CGACCg -3'
miRNA:   3'- gcaUCaCUGUGUCGUG-GGGGaGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 69552 0.7 0.780906
Target:  5'- gGUGGUGGuuucCACGGCACU--CUCGGCCc -3'
miRNA:   3'- gCAUCACU----GUGUCGUGGggGAGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 70454 0.67 0.905621
Target:  5'- --cGGUGGCGCuccccgAG-ACCCCCgaggCGGCCu -3'
miRNA:   3'- gcaUCACUGUG------UCgUGGGGGa---GCUGG- -5'
5134 5' -55.7 NC_001798.1 + 71134 0.66 0.917446
Target:  5'- gCGUGcGgacgGACGCGGC-CgUCUUCGACCc -3'
miRNA:   3'- -GCAU-Ca---CUGUGUCGuGgGGGAGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 71409 0.75 0.4757
Target:  5'- gCGggGGUGcccGCGCGGaCGCCCCC-CGGCCa -3'
miRNA:   3'- -GCa-UCAC---UGUGUC-GUGGGGGaGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 73720 0.66 0.928335
Target:  5'- uCGUGGcgGGCGCGGCACacaugaUUC-CGGCCg -3'
miRNA:   3'- -GCAUCa-CUGUGUCGUGg-----GGGaGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 81197 0.73 0.613254
Target:  5'- --cGG-GACACccgguuuaccAGCGCCCCCUCG-CCg -3'
miRNA:   3'- gcaUCaCUGUG----------UCGUGGGGGAGCuGG- -5'
5134 5' -55.7 NC_001798.1 + 84989 0.8 0.270363
Target:  5'- aCGUucgcgGACGCGuGCGCCCCgCUCGACCg -3'
miRNA:   3'- -GCAuca--CUGUGU-CGUGGGG-GAGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 87292 0.7 0.752832
Target:  5'- uCGUGcUGGCcgaccgccACAGCAcCCCCCUCcagGACCu -3'
miRNA:   3'- -GCAUcACUG--------UGUCGU-GGGGGAG---CUGG- -5'
5134 5' -55.7 NC_001798.1 + 90314 0.7 0.771667
Target:  5'- --aGGUcACACAugGCCCCCUCGACg -3'
miRNA:   3'- gcaUCAcUGUGUcgUGGGGGAGCUGg -5'
5134 5' -55.7 NC_001798.1 + 90487 0.71 0.684089
Target:  5'- gGUGGUGGCGuCGacGC-CCCCCUCGuACUu -3'
miRNA:   3'- gCAUCACUGU-GU--CGuGGGGGAGC-UGG- -5'
5134 5' -55.7 NC_001798.1 + 93483 0.69 0.80517
Target:  5'- aCGUGGUGcccggguacgagggGCGCcccacGGCGCCCCUcgUCGGCg -3'
miRNA:   3'- -GCAUCAC--------------UGUG-----UCGUGGGGG--AGCUGg -5'
5134 5' -55.7 NC_001798.1 + 96151 0.67 0.879232
Target:  5'- aCGgccgGGUGACucgccaugGCGGcCGCgCCCC-CGGCCg -3'
miRNA:   3'- -GCa---UCACUG--------UGUC-GUG-GGGGaGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 98581 0.74 0.543058
Target:  5'- cCGcGGUGGCGuCGGCGgCCCCggCGGCCc -3'
miRNA:   3'- -GCaUCACUGU-GUCGUgGGGGa-GCUGG- -5'
5134 5' -55.7 NC_001798.1 + 99992 0.66 0.923008
Target:  5'- cCGUGGa-GCGCAucaagacCACCUCCUCGAUCg -3'
miRNA:   3'- -GCAUCacUGUGUc------GUGGGGGAGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 103041 0.66 0.938285
Target:  5'- uCGgcGgccuCGCGucGCACCCCCUCGcgcgucGCCg -3'
miRNA:   3'- -GCauCacu-GUGU--CGUGGGGGAGC------UGG- -5'
5134 5' -55.7 NC_001798.1 + 104648 0.67 0.899362
Target:  5'- aCGUgGGUGGC-CAGgGCCCCgUgcucguagCGGCCg -3'
miRNA:   3'- -GCA-UCACUGuGUCgUGGGGgA--------GCUGG- -5'
5134 5' -55.7 NC_001798.1 + 105253 0.68 0.849392
Target:  5'- uCGgcGUcccGCGCGGCauccGCCUCUUCGGCCg -3'
miRNA:   3'- -GCauCAc--UGUGUCG----UGGGGGAGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 106948 0.66 0.933427
Target:  5'- ------cACGCAGCACCgUCUgGACCg -3'
miRNA:   3'- gcaucacUGUGUCGUGGgGGAgCUGG- -5'
5134 5' -55.7 NC_001798.1 + 108255 0.66 0.933427
Target:  5'- uGUGGUuGCcCAaCACCCCCgacgccagCGACCc -3'
miRNA:   3'- gCAUCAcUGuGUcGUGGGGGa-------GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.