Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5134 | 5' | -55.7 | NC_001798.1 | + | 131549 | 0.7 | 0.780906 |
Target: 5'- -----gGACGCgAGCGCCCCgaCGGCCc -3' miRNA: 3'- gcaucaCUGUG-UCGUGGGGgaGCUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 69552 | 0.7 | 0.780906 |
Target: 5'- gGUGGUGGuuucCACGGCACU--CUCGGCCc -3' miRNA: 3'- gCAUCACU----GUGUCGUGGggGAGCUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 148213 | 0.69 | 0.790013 |
Target: 5'- uGUGGUGuugcgaACGC-GCgaGCCCCCUCGcCCc -3' miRNA: 3'- gCAUCAC------UGUGuCG--UGGGGGAGCuGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 9135 | 0.69 | 0.798981 |
Target: 5'- gGUGGUcugcggcacgcgGGCGCGGCGCCgCCCgCG-CCg -3' miRNA: 3'- gCAUCA------------CUGUGUCGUGG-GGGaGCuGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 40698 | 0.69 | 0.798981 |
Target: 5'- uCGUAGcGAagcgcCACgAGCACCaCCC-CGGCCa -3' miRNA: 3'- -GCAUCaCU-----GUG-UCGUGG-GGGaGCUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 93483 | 0.69 | 0.80517 |
Target: 5'- aCGUGGUGcccggguacgagggGCGCcccacGGCGCCCCUcgUCGGCg -3' miRNA: 3'- -GCAUCAC--------------UGUG-----UCGUGGGGG--AGCUGg -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 145393 | 0.69 | 0.8078 |
Target: 5'- --gGGcGACGCGgggaaagcGCGCCCCCgccCGGCCg -3' miRNA: 3'- gcaUCaCUGUGU--------CGUGGGGGa--GCUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 3263 | 0.69 | 0.8078 |
Target: 5'- cCGUAGccggcgGGCACcGCGCgCUCgUCGGCCg -3' miRNA: 3'- -GCAUCa-----CUGUGuCGUG-GGGgAGCUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 128837 | 0.69 | 0.816463 |
Target: 5'- -----gGACccCGGCGCCCCCgCGGCCu -3' miRNA: 3'- gcaucaCUGu-GUCGUGGGGGaGCUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 153967 | 0.69 | 0.816463 |
Target: 5'- gCG-AG-GACGCggccGGCGCgCUCUCGACCg -3' miRNA: 3'- -GCaUCaCUGUG----UCGUGgGGGAGCUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 30419 | 0.69 | 0.824961 |
Target: 5'- -----gGACGCGGCcacGCCCCCggccCGGCCc -3' miRNA: 3'- gcaucaCUGUGUCG---UGGGGGa---GCUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 105253 | 0.68 | 0.849392 |
Target: 5'- uCGgcGUcccGCGCGGCauccGCCUCUUCGGCCg -3' miRNA: 3'- -GCauCAc--UGUGUCG----UGGGGGAGCUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 16087 | 0.68 | 0.849392 |
Target: 5'- uGUGGgGGCagACAGCGCUCCCggaaacgcaGGCCa -3' miRNA: 3'- gCAUCaCUG--UGUCGUGGGGGag-------CUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 153351 | 0.68 | 0.872083 |
Target: 5'- -----aGGCACGGUccgaugACCgCCUCGGCCg -3' miRNA: 3'- gcaucaCUGUGUCG------UGGgGGAGCUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 28271 | 0.68 | 0.872083 |
Target: 5'- gCGcGG-GcCGCAGCGCCCCCUuCcGCCc -3' miRNA: 3'- -GCaUCaCuGUGUCGUGGGGGA-GcUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 51491 | 0.67 | 0.879232 |
Target: 5'- cCGgAGcUGcAgGCGGCAuuCCCCCUgGACCg -3' miRNA: 3'- -GCaUC-AC-UgUGUCGU--GGGGGAgCUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 96151 | 0.67 | 0.879232 |
Target: 5'- aCGgccgGGUGACucgccaugGCGGcCGCgCCCC-CGGCCg -3' miRNA: 3'- -GCa---UCACUG--------UGUC-GUG-GGGGaGCUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 47870 | 0.67 | 0.892875 |
Target: 5'- cCGUGGgcgccggcgGGCGCucGCACgCCCCUCcccgcgGACCc -3' miRNA: 3'- -GCAUCa--------CUGUGu-CGUG-GGGGAG------CUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 53044 | 0.67 | 0.892875 |
Target: 5'- --cGG-GACGCGGCAUaCCUC-CGACCg -3' miRNA: 3'- gcaUCaCUGUGUCGUG-GGGGaGCUGG- -5' |
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5134 | 5' | -55.7 | NC_001798.1 | + | 128299 | 0.67 | 0.892875 |
Target: 5'- ----cUGACGCGccGCGCCCCCcCGuCCg -3' miRNA: 3'- gcaucACUGUGU--CGUGGGGGaGCuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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