miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5134 5' -55.7 NC_001798.1 + 14265 0.67 0.905621
Target:  5'- -----aGACACAGCcCCCCCaCGAUg -3'
miRNA:   3'- gcaucaCUGUGUCGuGGGGGaGCUGg -5'
5134 5' -55.7 NC_001798.1 + 70454 0.67 0.905621
Target:  5'- --cGGUGGCGCuccccgAG-ACCCCCgaggCGGCCu -3'
miRNA:   3'- gcaUCACUGUG------UCgUGGGGGa---GCUGG- -5'
5134 5' -55.7 NC_001798.1 + 51173 0.67 0.905621
Target:  5'- gCGUccgAGgcccgGGCgGCGGCGCCCCCcCG-CCg -3'
miRNA:   3'- -GCA---UCa----CUG-UGUCGUGGGGGaGCuGG- -5'
5134 5' -55.7 NC_001798.1 + 31203 0.67 0.899362
Target:  5'- -----cGAC-CGGCGCCCCCUgGcGCCc -3'
miRNA:   3'- gcaucaCUGuGUCGUGGGGGAgC-UGG- -5'
5134 5' -55.7 NC_001798.1 + 2422 0.67 0.899362
Target:  5'- cCGgcGUGugGCuGgGCCCCggCGGCUg -3'
miRNA:   3'- -GCauCACugUGuCgUGGGGgaGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 104648 0.67 0.899362
Target:  5'- aCGUgGGUGGC-CAGgGCCCCgUgcucguagCGGCCg -3'
miRNA:   3'- -GCA-UCACUGuGUCgUGGGGgA--------GCUGG- -5'
5134 5' -55.7 NC_001798.1 + 47870 0.67 0.892875
Target:  5'- cCGUGGgcgccggcgGGCGCucGCACgCCCCUCcccgcgGACCc -3'
miRNA:   3'- -GCAUCa--------CUGUGu-CGUG-GGGGAG------CUGG- -5'
5134 5' -55.7 NC_001798.1 + 53044 0.67 0.892875
Target:  5'- --cGG-GACGCGGCAUaCCUC-CGACCg -3'
miRNA:   3'- gcaUCaCUGUGUCGUG-GGGGaGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 128299 0.67 0.892875
Target:  5'- ----cUGACGCGccGCGCCCCCcCGuCCg -3'
miRNA:   3'- gcaucACUGUGU--CGUGGGGGaGCuGG- -5'
5134 5' -55.7 NC_001798.1 + 96151 0.67 0.879232
Target:  5'- aCGgccgGGUGACucgccaugGCGGcCGCgCCCC-CGGCCg -3'
miRNA:   3'- -GCa---UCACUG--------UGUC-GUG-GGGGaGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 51491 0.67 0.879232
Target:  5'- cCGgAGcUGcAgGCGGCAuuCCCCCUgGACCg -3'
miRNA:   3'- -GCaUC-AC-UgUGUCGU--GGGGGAgCUGG- -5'
5134 5' -55.7 NC_001798.1 + 28271 0.68 0.872083
Target:  5'- gCGcGG-GcCGCAGCGCCCCCUuCcGCCc -3'
miRNA:   3'- -GCaUCaCuGUGUCGUGGGGGA-GcUGG- -5'
5134 5' -55.7 NC_001798.1 + 153351 0.68 0.872083
Target:  5'- -----aGGCACGGUccgaugACCgCCUCGGCCg -3'
miRNA:   3'- gcaucaCUGUGUCG------UGGgGGAGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 105253 0.68 0.849392
Target:  5'- uCGgcGUcccGCGCGGCauccGCCUCUUCGGCCg -3'
miRNA:   3'- -GCauCAc--UGUGUCG----UGGGGGAGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 16087 0.68 0.849392
Target:  5'- uGUGGgGGCagACAGCGCUCCCggaaacgcaGGCCa -3'
miRNA:   3'- gCAUCaCUG--UGUCGUGGGGGag-------CUGG- -5'
5134 5' -55.7 NC_001798.1 + 30419 0.69 0.824961
Target:  5'- -----gGACGCGGCcacGCCCCCggccCGGCCc -3'
miRNA:   3'- gcaucaCUGUGUCG---UGGGGGa---GCUGG- -5'
5134 5' -55.7 NC_001798.1 + 153967 0.69 0.816463
Target:  5'- gCG-AG-GACGCggccGGCGCgCUCUCGACCg -3'
miRNA:   3'- -GCaUCaCUGUG----UCGUGgGGGAGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 128837 0.69 0.816463
Target:  5'- -----gGACccCGGCGCCCCCgCGGCCu -3'
miRNA:   3'- gcaucaCUGu-GUCGUGGGGGaGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 3263 0.69 0.8078
Target:  5'- cCGUAGccggcgGGCACcGCGCgCUCgUCGGCCg -3'
miRNA:   3'- -GCAUCa-----CUGUGuCGUG-GGGgAGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 145393 0.69 0.8078
Target:  5'- --gGGcGACGCGgggaaagcGCGCCCCCgccCGGCCg -3'
miRNA:   3'- gcaUCaCUGUGU--------CGUGGGGGa--GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.