miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5134 5' -55.7 NC_001798.1 + 130573 1.13 0.001863
Target:  5'- aCGUAGUGACACAGCACCCCCUCGACCa -3'
miRNA:   3'- -GCAUCACUGUGUCGUGGGGGAGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 84989 0.8 0.270363
Target:  5'- aCGUucgcgGACGCGuGCGCCCCgCUCGACCg -3'
miRNA:   3'- -GCAuca--CUGUGU-CGUGGGG-GAGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 142231 0.76 0.430226
Target:  5'- gCGUGGUGAUACAacaCACCCCCaUCGGgCu -3'
miRNA:   3'- -GCAUCACUGUGUc--GUGGGGG-AGCUgG- -5'
5134 5' -55.7 NC_001798.1 + 71409 0.75 0.4757
Target:  5'- gCGggGGUGcccGCGCGGaCGCCCCC-CGGCCa -3'
miRNA:   3'- -GCa-UCAC---UGUGUC-GUGGGGGaGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 122709 0.74 0.513736
Target:  5'- --aGGUGACGCGGCGCUUCCcCGugCu -3'
miRNA:   3'- gcaUCACUGUGUCGUGGGGGaGCugG- -5'
5134 5' -55.7 NC_001798.1 + 98581 0.74 0.543058
Target:  5'- cCGcGGUGGCGuCGGCGgCCCCggCGGCCc -3'
miRNA:   3'- -GCaUCACUGU-GUCGUgGGGGa-GCUGG- -5'
5134 5' -55.7 NC_001798.1 + 31566 0.73 0.58295
Target:  5'- uCGUcGG-GGCGCGccgcGCGCCCCCgcgCGGCCg -3'
miRNA:   3'- -GCA-UCaCUGUGU----CGUGGGGGa--GCUGG- -5'
5134 5' -55.7 NC_001798.1 + 81197 0.73 0.613254
Target:  5'- --cGG-GACACccgguuuaccAGCGCCCCCUCG-CCg -3'
miRNA:   3'- gcaUCaCUGUG----------UCGUGGGGGAGCuGG- -5'
5134 5' -55.7 NC_001798.1 + 147531 0.72 0.633538
Target:  5'- uCGU-GUGAgAgAGCGCgCCCCUCGaacGCCg -3'
miRNA:   3'- -GCAuCACUgUgUCGUG-GGGGAGC---UGG- -5'
5134 5' -55.7 NC_001798.1 + 112411 0.71 0.67403
Target:  5'- gGUGGUGGCAUAGCugaGCUCCa-UGGCCg -3'
miRNA:   3'- gCAUCACUGUGUCG---UGGGGgaGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 90487 0.71 0.684089
Target:  5'- gGUGGUGGCGuCGacGC-CCCCCUCGuACUu -3'
miRNA:   3'- gCAUCACUGU-GU--CGuGGGGGAGC-UGG- -5'
5134 5' -55.7 NC_001798.1 + 150052 0.71 0.694106
Target:  5'- -----cGGCGCGGCGCCgCCCUCuuGGCCc -3'
miRNA:   3'- gcaucaCUGUGUCGUGG-GGGAG--CUGG- -5'
5134 5' -55.7 NC_001798.1 + 109690 0.71 0.723818
Target:  5'- cCGUuccUGGCG-GGCGCgCCCUCGGCCg -3'
miRNA:   3'- -GCAuc-ACUGUgUCGUGgGGGAGCUGG- -5'
5134 5' -55.7 NC_001798.1 + 44029 0.7 0.733579
Target:  5'- uCGUAcGUGGCucCGGCGCCCCCcaagCGcggaGCCu -3'
miRNA:   3'- -GCAU-CACUGu-GUCGUGGGGGa---GC----UGG- -5'
5134 5' -55.7 NC_001798.1 + 48778 0.7 0.743253
Target:  5'- uCGgGGacGCACGGCACCCCCggCGAUUc -3'
miRNA:   3'- -GCaUCacUGUGUCGUGGGGGa-GCUGG- -5'
5134 5' -55.7 NC_001798.1 + 151846 0.7 0.743253
Target:  5'- gGgcGUGAgGCGGgACCCCCgCG-CCg -3'
miRNA:   3'- gCauCACUgUGUCgUGGGGGaGCuGG- -5'
5134 5' -55.7 NC_001798.1 + 87292 0.7 0.752832
Target:  5'- uCGUGcUGGCcgaccgccACAGCAcCCCCCUCcagGACCu -3'
miRNA:   3'- -GCAUcACUG--------UGUCGU-GGGGGAG---CUGG- -5'
5134 5' -55.7 NC_001798.1 + 32057 0.7 0.762306
Target:  5'- cCGgcGUccgcgGGCGCcGCGCCCCCgUCGGCg -3'
miRNA:   3'- -GCauCA-----CUGUGuCGUGGGGG-AGCUGg -5'
5134 5' -55.7 NC_001798.1 + 90314 0.7 0.771667
Target:  5'- --aGGUcACACAugGCCCCCUCGACg -3'
miRNA:   3'- gcaUCAcUGUGUcgUGGGGGAGCUGg -5'
5134 5' -55.7 NC_001798.1 + 135279 0.7 0.771667
Target:  5'- gCGcUGGUGGC--GGcCGCCCCCUCGgaGCCc -3'
miRNA:   3'- -GC-AUCACUGugUC-GUGGGGGAGC--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.